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...tttgagcttgcatcataatacctccagttcagtctccccatgcatctgcttttaagcaaaattggtaatagcattgagcagcttcttgtttctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAG
species | Zea mays |
transcript | GRMZM2G132712_T03 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCEST: gi|211422266|gb|FK992807.1|FK992807
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGC
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTEST: gi|211422265|gb|FK992806.1|FK992806
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCT
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGEST: gi|211422271|gb|FK992812.1|FK992812
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACG
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTEST: gi|211422274|gb|FK992815.1|FK992815
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCT
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAANGGATGCTGTACGCCTGTGCACTACTGCTEST: gi|211422270|gb|FK992811.1|FK992811
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCT
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTEST: gi|211422268|gb|FK992809.1|FK992809
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACT
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTEST: gi|211422273|gb|FK992814.1|FK992814
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCT
EST: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATANGAATAAAG GACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCT
genomic: GGGAGTTGCCTGAGGATGACCTGACTCTGCTTGGCATCATAGGAATAAAGgttgcttact ... tctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCT
ctgcttttaagcaaaattggtaatagcattgagcagcttcttgtttctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAG
cttcttgtttctccta CT-rich tract
aaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgagcttgcatcataatacctccagttcagtctccccatgcatctgcttttaagcaaaattggtaatagcattgagcagcttcttgtttctcctatagGACCCCTGTCGCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -gcttgca
- - - - - - - - - -acctcca
- - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctt