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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtctttctatttttttctttctttcaagtatacatgcattttctttggaaatggatttttttatattctatgactgatagccataatgtctgcaatttagGTGCGCATGGTTACAGGAGATAATATTGAAACAGCTAAAGCTATAGCTCTGGAGTGTGGAATACTAGATGCAAATAGTGTTATTTCAGAGCCAGTTGTAA

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132712_T03 (Zea mays), 3'ss of exon 24
lower sequence: LOC_Os08g40530.2 (Oryza sativa), 3'ss of exon 8
-gtctttctatttttttctttctttcaagtatacatgcattttctttggaaatgg-atttttttatattctatgactgatagccataatgtctgcaatttagGTGCGCATGGTTACAGGAGATAATATTGAAACAGCTAAAGCTATAGCTCTGGAGTGTGGAATACTAGATGCAAATAGTGTTATTTCAGAGCCAGTTGTAA
   | |   |    ||  | || | ||  |     | | | ||| ||  |||||  ||| |||  ||   |||   |||||    |  ||| | || | |||||||||||||| || |||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||| | | | ||   |||||| ||||||
caacatgtcaggccttcatgtcatgcatattgttttccttcttccttataaatgatattatttcttacattatccgtgataattctt-tgtgtaca-tgtagGTGCGCATGGTCACTGGAGATAACATTGAAACAGCTAAAGCCATAGCTTTGGAGTGTGGAATATTAGATGCAAATGGAGCTTTTGTGGAGCCATTTGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211501925|gb|FL162234.1|FL162234
EST:     GCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAG                         GTGCGCATGGTTACAGGAGATAATATTGAAACAGCTAAAGCTATAGCTCTG
genomic: GCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAGgtttgtatta ... tgcaatttagGTGCGCATGGTTACAGGAGATAATATTGAAACAGCTAAAGCTATAGCTCTG
EST: gi|211422268|gb|FK992809.1|FK992809
EST:     GCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAG                         GTGCGCATGGTTAC
genomic: GCCCAGGTGTAAGGGATGCTGTACGCCTGTGCACTACTGCTGGTGTTAAGgtttgtatta ... tgcaatttagGTGCGCATGGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaaatggatttttttatattctatgactgatagccataatgtctgcaatttagGTGCGCATGGTTACAGGAGATAATATTGAAACAGCTAAAGCTATAGCTCTGGAGTGTGGAATACTAGATGCAAATAGTGTTATTTCAGAGCCAGTTGTAA
                          gactgat  putative branch site (score: 3)
     atggatttttttatat  TA-rich tract