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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttagtaaccttgaaaatattagatgtcttctgaaaatacaatgcagttttagctaccttctttattattaattactacttgttttgctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCAAATGTTATTTTTTCCCGAGGGTAACAAATGTGGCCCCCAGTTTTACCCT

Basic information

species Zea mays
transcript GRMZM2G095348_T03
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 23
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 24
ttgcttagtaaccttgaaaatattagatgtcttctgaaaatacaatgcagttttagctaccttctttatt--attaa--ttactacttgttttgctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTG-GCTGCAAATGTTATTTTTTCCCGAGGGTAACA--AATGTGGCCCCCAGTTTTACCCT
 ||    || |   | | |    ||| |   || |        ||  |||||||   ||   |  |||||  | | |  ||| |  ||  ||| |||||||||||||||||||||||||| || || || |||         ||  |||   ||   ||| | |    |        | |    |   |  ||  ||  |  ||   
-tgtagggtcaagcttatagc--tagcttatttttttgttcttaaaccagttttt-ttattctaattattgaactgaatttattcttttcttttctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGTGATGCTGTGCCGTTTGAGCTTTGATCTTATCATATCCTTCAACTGAAC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934072|gb|CF038884.1|CF038884
EST:     ATGAGGAACCTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ATGAGGAACCTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGgtatctcatg ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagttttagctaccttctttattattaattactacttgttttgctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCAAATGTTATTTTTTCCCGAGGGTAACAAATGTGGCCCCCAGTTTTACCCT
                        tattaat  putative branch site (score: 2)
                                    cttgttttgctcctt  putative PPT
                ttctttattattaatt  TA-rich tract