Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttagtaaccttgaaaatattagatgtcttctgaaaatacaatgcagttttagctaccttctttattattaattactacttgttttgctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCAAATGTTATTTTTTCCCGAGGGTAACAAATGTGGCCCCCAGTTTTACCCT

Basic information

species Zea mays
transcript GRMZM2G095348_T02
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 23
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 24
ttgcttagtaaccttgaaaatattagatgtcttctgaaaatacaatgcagttttagctaccttctttatt--attaa--ttactacttgttttgctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTG-GCTGCAAATGTTATTTTTTCCCGAGGGTAACA--AATGTGGCCCCCAGTTTTACCCT
 ||    || |   | | |    ||| |   || |        ||  |||||||   ||   |  |||||  | | |  ||| |  ||  ||| |||||||||||||||||||||||||| || || || |||         ||  |||   ||   ||| | |    |        | |    |   |  ||  ||  |  ||   
-tgtagggtcaagcttatagc--tagcttatttttttgttcttaaaccagttttt-ttattctaattattgaactgaatttattcttttcttttctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGTGATGCTGTGCCGTTTGAGCTTTGATCTTATCATATCCTTCAACTGAAC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32856876|gb|CD996557.1|CD996557
EST:     GGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: GGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|32839442|gb|CD979123.1|CD979123
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|60345624|gb|DN212597.1|DN212597
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|32846872|gb|CD986553.1|CD986553
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|60347180|gb|DN214153.1|DN214153
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|211347064|gb|FK984260.1|FK984260
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|32934584|gb|CF039396.1|CF039396
EST:     AGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: AGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|113841925|gb|DW968155.1|DW968155
EST:     AGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: AGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|71443012|gb|DR824062.1|DR824062
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|6681776|gb|AW287763.1|AW287763
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCNCAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
EST: gi|6563651|gb|AW231378.1|AW231378
EST:     ACATGAAGAGACAGTTTCAGTAAATGGGAAGGAGGGTGAGGAACAGCAGG                         TGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA
genomic: ACATGAAGAGACAGTTTCAGTAAATGGGAACGAGGGTGAGGAACAGCAGGgtacggacaa ... ctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagttttagctaccttctttattattaattactacttgttttgctccttgcagTGCTAACTGAACATGAATAGGGGCCGAGGGAAGCACAACGCATTGGCTGCAAATGTTATTTTTTCCCGAGGGTAACAAATGTGGCCCCCAGTTTTACCCT
                        tattaat  putative branch site (score: 2)
                                    cttgttttgctcctt  putative PPT
                ttctttattattaatt  TA-rich tract