1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...cttttgttgctcgtttggccaagtatattcatgttgggagttaggcttacattgaaccttgctgggccaatcttgctgaagcactctattgattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATGCATTCTACCGACAGCCAAATTGGAAGCAAGAACTACAGAAGCGAAAAG
species | Zea mays |
transcript | GRMZM2G047310_T02 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|44901315|gb|CK827860.1|CK827860
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGTGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|37392247|gb|CF633372.1|CF633372
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: CAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTG-TTTTGGCATNGACCAAGGAEST: gi|89252837|gb|DY624623.1|DY624623
genomic: CAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCAT-GACCAAGGA
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|211011730|gb|FL062983.1|FL062983
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTTGCATGACCCAGGATEST: gi|211541508|gb|FL473164.1|FL473164
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCMCCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|14243479|gb|BG841162.2|BG841162
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|211156686|gb|FL406072.1|FL406072
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|211478872|gb|FL381839.1|FL381839
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|76914074|gb|DV165401.1|DV165401
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: CAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|60348915|gb|DN215888.1|DN215888
genomic: CAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|74240489|gb|DT648403.1|DT648403
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|67017477|gb|CO446226.1|CO446226
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|60346198|gb|DN213171.1|DN213171
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|60393923|gb|DN226793.1|DN226793
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|74240490|gb|DT648404.1|DT648404
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|5928766|gb|AW055983.1|AW055983
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCCCCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|211246679|gb|FL466714.1|FL466714
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|67014678|gb|CO443427.1|CO443427
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|60350996|gb|DN217969.1|DN217969
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|93281334|gb|EB673598.1|EB673598
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCCCCGATCCAGTTCGTGGGATGGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|6851640|gb|AW352650.1|AW352650
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTCCAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|6465597|gb|AW191192.1|AW191192
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|60394045|gb|DN226915.1|DN226915
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|6012269|gb|AW061811.1|AW061811
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|71760290|gb|DR958227.1|DR958227
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATEST: gi|149103859|gb|EE289270.2|EE289270
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGAEST: gi|14243713|gb|BG841420.2|BG841420
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGA
EST: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAG GCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
genomic: TATCCAAATCCACCGATCCAGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgtgcct ... gattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGAT
cttacattgaaccttgctgggccaatcttgctgaagcactctattgattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATGCATTCTACCGACAGCCAAATTGGAAGCAAGAACTACAGAAGCGAAAAG
tattgat putative branch site (score: 78)
tattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgttgctcgtttggccaagtatattcatgttgggagttaggcttacattgaaccttgctgggccaatcttgctgaagcactctattgattctgcagGCATACTTATCAGATAGTGAATTCCAAACTGTTTTTGGCATGACCAAGGATGCATTCTACCGACAGCCAAATTGGAAGCAAGAACTACAGAAGCGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - tgttgct
- - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa