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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccttgctatgctccagattttcttccaagtcttcctatcaattatggaatatgattatccctgagccttgctgcgtttccacatatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG

Basic information

species Zea mays
transcript GRMZM2G025340_T01
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211018176|gb|FL213621.1|FL213621
EST:     AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCT                         GTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
genomic: AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCTgtaagttcct ... catatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
EST: gi|32932707|gb|CF037519.1|CF037519
EST:     AGAAATGCGGGTCTTNTGAAGCGTCAGCTTACGTGGCT                         GTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
genomic: AGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCTgtaagttcct ... catatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
EST: gi|211018178|gb|FL213623.1|FL213623
EST:     AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCT                         GTTCAACGAGCACCTGGGAAAGAAAGGTATCTGTGGGCACATCAATGTAGA
genomic: AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCTgtaagttcct ... catatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
EST: gi|32931357|gb|CF036169.1|CF036169
EST:     AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCT                         GTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
genomic: AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCTgtaagttcct ... catatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
EST: gi|32931744|gb|CF036556.1|CF036556
EST:     AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCT                         GTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
genomic: AAGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTACGTGGCTgtaagttcct ... catatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGA
EST: gi|211018179|gb|FL213624.1|FL213624
EST:     AGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCA-CTTACCGTGGCT                         GTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAG
genomic: AGAAGTTTCAGAGAAATGCGGGTCTTTTGAAGCGTCAGCTTAC-GTGGCTgtaagttcct ... catatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaattatggaatatgattatccctgagccttgctgcgtttccacatatgaaagGTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG
                                       tttccac  CT-rich tract
           aatatgattat  TA-rich tract