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gtcatgctgttgatcacttcccatagtcctcccatagtcccatctgttccatcctttgaggctccatgtttatttttatattaatttttcacatcaatattttaaagcctggcggtgttatattttttacatcactctttaaacacatacactggtctgatatatgtttttagttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATCCTGAAAGCACGGTGCTTGAAGATCTTATTAAGGAAGCTGACAGATTAG
species | Zea mays |
transcript | GRMZM2G009849_T03 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|20301651|gb|BQ164594.1|BQ164594
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|61118500|gb|DN559461.1|DN559461
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|18450492|gb|BM428770.1|BM428770
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|18649578|gb|BM498397.1|BM498397
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|67035401|gb|CO463934.1|CO463934
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|18450764|gb|BM429042.1|BM429042
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|18648832|gb|BM497651.1|BM497651
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATEST: gi|18648721|gb|BM497540.1|BM497540
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
EST: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAG TCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
genomic: CGGACTGGCATGAAGCTCTTGACATAGTTGCATTAGGTTTGCCTGAGCAGgtcatgctgt ... ttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGAT
acatcactctttaaacacatacactggtctgatatatgtttttagttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATCCTGAAAGCACGGTGCTTGAAGATCTTATTAAGGAAGCTGACAGATTAG
gtctgat putative branch site (score: 233)
ttttctgc putative PPT
atatatgtttttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatgctgttgatcacttcccatagtcctcccatagtcccatctgttccatcctttgaggctccatgtttatttttatattaatttttcacatcaatattttaaagcctggcggtgttatattttttacatcactctttaaacacatacactggtctgatatatgtttttagttttctgcagTCCGTTGAAGGTATGAAAGTTATATGCCATGAGCTAACACAGGCAGCTGATCCTGAAAGCACGGTGCTTGAAGATCTTATTAAGGAAGCTGACAGATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA