1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...cttaaacaaatttgacttaacacaaacatagatgggcttgtatttctgatcagaagtagtattgattatttttgctgtggctaaaaatacgttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAGAGAAACGGTACAAACTCATGGATGCAATCCATCCCACAGCGGGGTTGT
species | Zea mays |
transcript | GRMZM5G824405_T01 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|5714261|gb|AI944246.1|AI944246
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|32930565|gb|CF035377.1|CF035377
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|211455219|gb|FL443686.1|FL443686
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|78021450|gb|DV489837.1|DV489837
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|12968557|gb|BG265503.1|BG265503
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: AAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|5714269|gb|AI944254.1|AI944254
genomic: AAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: TTTATGCATACTTTGCGGCCAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAEST: gi|67015674|gb|CO444423.1|CO444423
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
ctgatcagaagtagtattgattatttttgctgtggctaaaaatacgttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAGAGAAACGGTACAAACTCATGGATGCAATCCATCCCACAGCGGGGTTGT
ggctaaa putative branch site (score: 3)
cgttcct putative PPT
tagtattgattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaacaaatttgacttaacacaaacatagatgggcttgtatttctgatcagaagtagtattgattatttttgctgtggctaaaaatacgttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAAGAGAAACGGTACAAACTCATGGATGCAATCCATCCCACAGCGGGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA