1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tatgatgctgaaagagaatacagttctagcacggtatataattatatatgattactgacatcaaccagatttatataaatgctgctccggtcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATACTACTTCATATACTGCGCCGCTGGTTTCAAGTCACGGACACTTGGGAAC
species | Zea mays |
transcript | GRMZM2G178917_T01 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: ACTACCCAACGGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGA TGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATAEST: gi|120481079|gb|EH211154.1|EH211154
genomic: ACTACCCAAC-GCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGAgtaagtagta ... tcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATA
EST: TACTACCCAACGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGA TGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATAEST: gi|37382176|gb|CF628021.1|CF628021
genomic: TACTACCCAACGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGAgtaagtagta ... tcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATA
EST: TACTACCCAACGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGA TGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATAEST: gi|211428264|gb|FL472992.1|FL472992
genomic: TACTACCCAACGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGAgtaagtagta ... tcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATA
EST: TACTACCCAACGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGA TGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATA
genomic: TACTACCCAACGCTGATACAGTGGAGGGACAACTTCATGGCCAATAAGGAgtaagtagta ... tcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATA
atatgattactgacatcaaccagatttatataaatgctgctccggtcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATACTACTTCATATACTGCGCCGCTGGTTTCAAGTCACGGACACTTGGGAAC
tactgac putative branch site (score: 24)
tcctctgc putative PPT
agatttatataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatgctgaaagagaatacagttctagcacggtatataattatatatgattactgacatcaaccagatttatataaatgctgctccggtcctctgcagTGCAATTTTGGCCCTGGGCTTCGATGAGAAATTCATCCGTATATGGGAATACTACTTCATATACTGCGCCGCTGGTTTCAAGTCACGGACACTTGGGAAC
- -gatgctg
- - - - - aaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaacca