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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatttctatttgaattttgatcttaaaatgcattccccatctaactgttgcctaacacatgctcgtactaaaaaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGATTCAAACATTGAGAAGATATTGGCATTGCTCTTCAATCACTGTGAAAGTG

Basic information

species Zea mays
transcript GRMZM2G168629_T04
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 22
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 3'ss of exon 22
gtttatttctatttgaattttgatcttaaaatgcattccccatctaactgttgcctaacacatgctcgtactaaaaaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGATTCAAACATTGAGAAGATATTGGCATTGCTCTTCAATCACTGTGAAAGTG
|||| |  | ||| | |||| |   || |  ||||||| |||| ||  |||||| |||  | |||| |||||  ||| |   |||||||| |  || || |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
gtttgtccccattaggatttgg--tttgatgtgcattctccatgtatttgttgcttaattcttgcttgtactttaaatcactcagGTAATTGCACGGCAGTCTGTTGACCATACTGGCCAGAGTGAGCTCCAGGATTCAAACATTGAGAAGATTTTGGCATTGCTCTTTAATCACTGTGAAAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14191175|gb|BG833405.1|BG833405
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
EST: gi|91877710|gb|EB407667.1|EB407667
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
EST: gi|67019143|gb|CO447892.1|CO447892
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
EST: gi|31354241|gb|CD438598.1|CD438598
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
EST: gi|89761370|gb|DY689409.1|DY689409
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
EST: gi|78119497|gb|DV537881.1|DV537881
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
EST: gi|71448044|gb|DR829094.1|DR829094
EST:     TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAG                         GTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACA
genomic: TTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAGAGgtttatttct ... aaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcattccccatctaactgttgcctaacacatgctcgtactaaaaaactgccagGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGATTCAAACATTGAGAAGATATTGGCATTGCTCTTCAATCACTGTGAAAGTG
                                      tactaaa  putative branch site (score: 1)
                                      tactaaaaaa  TA-rich tract