Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttgttagtcactgccagccacttcgattgggtggagtagacaactgttggactatggttgaaccatctttcttttttttcgcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCTGTCCGCGTCGGGCAAGCGGTCGACGTGGTTGGTCAGGCAGGAAGGCCGA

Basic information

species Zea mays
transcript GRMZM2G155384_T03
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 3'ss of exon 22
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 3'ss of exon 23
gtatgtttgttagtcactgccagccacttcgattgggtggagtagacaactgtt--ggactatggttgaaccatctttcttttttttcgcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCTGTCCGCGTCGGGCAAGCGGTCGACGTGGTTGGTCAGGCAGGAAGGCCGA
||||| |   |  |   |    | || ||   |||  | | | | || ||| ||  | ||||   ||||          | | || | |  ||||||||| || |||||||| || || || |||||||| |||||||| || || || || || || |||||||| || || |||||||||||||| |||||||| |
gtatggtccatt-tagttaattgacagttttgttgc-tagtgcaaactactatttggtactaaaattgagt--------tctcttcttgtatgtacagCCTAGAATGCTTTTAACGGTGGATGAGGATCTAAAGCCCCTATCTGTTCCAGTACGGGTTGGGCAAGCTGTTGATGTGGTTGGTCAGGCTGGAAGGCCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211100370|gb|FL070848.1|FL070848
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|60347371|gb|DN214344.1|DN214344
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|6031296|gb|AW076153.1|AW076153
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|5847123|gb|AW000202.1|AW000202
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|32867559|gb|CF007241.1|CF007241
EST:     TCCTAGGGAGATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|18175836|gb|BM351006.1|BM351006
EST:     ACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: ACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|211100371|gb|FL070849.1|FL070849
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagacaactgttggactatggttgaaccatctttcttttttttcgcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCTGTCCGCGTCGGGCAAGCGGTCGACGTGGTTGGTCAGGCAGGAAGGCCGA
                           ccatctttcttttttt  CT-rich tract
                             atctttctttttttt  TA-rich tract