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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagctaacaactagactagatttcttcaaggagcgaaggtcgcaactgatggaacaacttcatagccttgatttgggacgtggatctgctccgcagggctttccattcaagccaccctctccttgGAACCACCCGAGGTAGGAGGATGACCGTTTGATTTCATGATTGTAAATTCTTCAGTAGTGGTTCTTTTCTCCCCGCCTGGCGATTGCAGAAAACTGCATA

Basic information

species Zea mays
transcript GRMZM2G115975_T02
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115975_T02 (Zea mays), 3'ss of exon 22
lower sequence: LOC_Os03g24180.1 (Oryza sativa), 3'ss of exon 21
gtagagctaacaactagactagatttcttcaaggagcgaaggtcgcaactgatggaacaac-ttcatagccttgatttgggacgtggatctgctccgcagggctttccattcaagccaccctctccttgGAACCACCCGAGGTAGGAGGATGACCGTTTGATTTCATGATTGTAAATTCTTCAGTAGTGGTTCTTTTCTCCCCGCCTGGCGATTGCAGAAAACTGCATA
||   |  ||  ||    | |   |  ||       | ||  ||    |  | |||| |   ||| ||   ||    |  | |  ||   || |     | |    ||| |   | |  ||||  ||| |    | | ||   |  ||| |   | | |   |  | ||  | |  | |   | |  |||                                       
gttagggaaatcac--agccactctatttagcactactaatatcct--ccaaaggaagattgttcttatttttatcgtatggcagGGTGTTGATTATGGGAGGCAACCAATGGTGGCCTCCTCCACTTTGGTAGAACTGACA-ACTAGGCTAGACTTCT---TCAAAGAGCGGAGGT-CGCAACTGATGG---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60401279|gb|DN234086.1|DN234086
EST:     GGCATTGAATTTGGGAGGCAACCAATGGTCACATCCTCCACTTTG                         GAACCACCCGAGGTAGGAGGATGACCGTTTGATTTCATGATTGTAAATTCT
genomic: GGCATTGAATTTGGGAGGCAACCAATGGTCACATCCTCCACTTTGgtagagctaa ... cctctccttgGAACCACCCGAGGTAGGAGGATGACCGTTTGATTTCATGATTGTAAATTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgggacgtggatctgctccgcagggctttccattcaagccaccctctccttgGAACCACCCGAGGTAGGAGGATGACCGTTTGATTTCATGATTGTAAATTCTTCAGTAGTGGTTCTTTTCTCCCCGCCTGGCGATTGCAGAAAACTGCATA
 ccttgat  putative branch site (score: 5)
                                         ccaccctctcctt  putative PPT