1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...gaaagtatgatatatatatacttcggaagtgacaataaatgagctttgaatattcatttttttattaagccgtctaatttttattgtcaaaatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG
species | Zea mays |
transcript | GRMZM2G099056_T01 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|86469278|gb|DY235648.1|DY235648
genomic: GGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|50324254|gb|CO519380.1|CO519380
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|32846783|gb|CD986464.1|CD986464
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACEST: gi|50324253|gb|CO519379.1|CO519379
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTAC
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|5608489|gb|AI902156.1|AI902156
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|5597302|gb|AI891400.1|AI891400
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCACCCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|30032170|gb|CB834021.1|CB834021
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCACCCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|31405680|gb|CD484412.1|CD484412
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAAEST: gi|32933807|gb|CF038619.1|CF038619
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTEST: gi|30087811|gb|CB886017.1|CB886017
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGT
EST: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAG ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
genomic: AATTCAACCGGAAAGTTGACGAATTGACTTACACTATTGCTGCTGAGGAGgtgagctaac ... aatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAA
ttgaatattcatttttttattaagccgtctaatttttattgtcaaaatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG
gtctaat putative branch site (score: 124)
tttttc putative PPT
tctaatttttattgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtatgatatatatatacttcggaagtgacaataaatgagctttgaatattcatttttttattaagccgtctaatttttattgtcaaaatttttcagATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - caataaa