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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgaacgacctgctgtatagttataatgtattgttctttttgtgtccatcctaacacattatatgccgttttgtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAATAGGTGAAGTTACCAATAGTGCCATTTACCTGATACTTTGTTGGTAGAT

Basic information

species Zea mays
transcript GRMZM2G060611_T01
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092011|gb|DV520385.1|DV520385
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|211090145|gb|FL283407.1|FL283407
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|211411800|gb|FL441053.1|FL441053
EST:     TGAAACCCCAGAAGAACASVRNWCBAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCC-AAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCA
EST: gi|84351501|gb|DW245906.1|DW245906
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|4804481|gb|AI665351.2|AI665351
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|5686744|gb|AI939837.1|AI939837
EST:     GAAACCCCAGAAGAACAGGGTTCGAGGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: GAAACCCCAGAAGAACAGGGTTCGA-GGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|5686787|gb|AI939880.1|AI939880
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACCTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|78092012|gb|DV520386.1|DV520386
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|76911616|gb|DV164349.1|DV164349
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|4827671|gb|AI668363.1|AI668363
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|78025639|gb|DV494026.1|DV494026
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|4826194|gb|AI667822.1|AI667822
EST:     AAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGANNAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: AAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGA--AGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|5343076|gb|AI795486.1|AI795486
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA
EST: gi|166689566|gb|EG296454.1|EG296454
EST:     TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCC                         AGTGCCAAAACTAGTTCCACACTTGCGGCCGGGCGAAAGAACCCGTGGCAA
genomic: TGAAACCCCAGAAGAACAGGGTTCGAGGCAAGCTGAAGAAGTTGAAGGCCgtaagtcgaa ... gtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgttctttttgtgtccatcctaacacattatatgccgttttgtacctgcagAGTGCCAAAACTAGTCCCACACTTGCGGCAGGGCGAAAGAACCCGTGGCAATAGGTGAAGTTACCAATAGTGCCATTTACCTGATACTTTGTTGGTAGAT
                     tcctaac  putative branch site (score: 1)
                            acattatat  TA-rich tract