1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtacactcgagaactatatttgatattttctggtggacaattgatttctgtcagagtaaaccttgcgctttcaccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATTCAAGATTTGATTGAATTGATTAGAACGGAGAAGCAAAGTGATAACTCT
species | Zea mays |
transcript | GRMZM5G844195_T03 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|24768924|gb|CA404053.1|CA404053
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|31356855|gb|CD441212.1|CD441212
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|67012219|gb|CO440968.1|CO440968
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|211321315|gb|FL043264.1|FL043264
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|18964320|gb|BM660937.1|BM660937
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|24769517|gb|CA404646.1|CA404646
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|211321314|gb|FL043263.1|FL043263
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAYEST: gi|32807352|gb|CD959586.1|CD959586
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: GATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|67014984|gb|CO443733.1|CO443733
genomic: GATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|5846906|gb|AI999989.1|AI999989
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: AGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|32865123|gb|CF004805.1|CF004805
genomic: AGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|148965444|gb|EE016250.2|EE016250
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|6827586|gb|AW331229.1|AW331229
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|211321316|gb|FL043265.1|FL043265
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|32806077|gb|CD958311.1|CD958311
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: GATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|211462641|gb|FL447919.1|FL447919
genomic: GATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: TCAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|211321311|gb|FL043260.1|FL043260
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|7162539|gb|AW520161.1|AW520161
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|37382801|gb|CF628365.1|CF628365
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|211321310|gb|FL043259.1|FL043259
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|5296300|gb|AI783070.1|AI783070
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: AGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATEST: gi|32865124|gb|CF004806.1|CF004806
genomic: AGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
EST: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
genomic: ACAAGGGGGAGCAGTGGATCTGTAACCCTATTTATTGAAATTTTGAACAAgtacactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGAT
tctggtggacaattgatttctgtcagagtaaaccttgcgctttcaccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATTCAAGATTTGATTGAATTGATTAGAACGGAGAAGCAAAGTGATAACTCT
aattgat putative branch site (score: 4)
ctttcaccattttc putative PPT
aattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcgagaactatatttgatattttctggtggacaattgatttctgtcagagtaaaccttgcgctttcaccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCACAAATCACAAACACTGTGATTCAAGATTTGATTGAATTGATTAGAACGGAGAAGCAAAGTGATAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG