1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaaactcgagaatagatttgatattttctggtggataattgatttgtgtcagtaaacctcatgctttcaccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATTCAAGATTTGATTGAATTGATTAGAACGGAGAAGCAAAGTGATAACTCT
species | Zea mays |
transcript | GRMZM5G825524_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: GATCCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATEST: gi|14203142|gb|BG836819.1|BG836819
genomic: GATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: ACAAGGGGAAGCAGTNGATCCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACYGTGATEST: gi|9794638|gb|BE552946.1|BE552946
genomic: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATEST: gi|60347405|gb|DN214378.1|DN214378
genomic: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATEST: gi|60359345|gb|DN226318.1|DN226318
genomic: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: CCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATEST: gi|113703417|gb|EE680921.1|EE680921
genomic: CCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTTTTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATEST: gi|88751502|gb|DY535643.1|DY535643
genomic: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATEST: gi|211065109|gb|FL474730.1|FL474730
genomic: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
EST: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAA GTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
genomic: ACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATTGAGATTTTGAACAAgtaaactcga ... ccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGAT
tttctggtggataattgatttgtgtcagtaaacctcatgctttcaccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATTCAAGATTTGATTGAATTGATTAGAACGGAGAAGCAAAGTGATAACTCT
aattgat putative branch site (score: 4)
ctttcaccattttc putative PPT
ataattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactcgagaatagatttgatattttctggtggataattgatttgtgtcagtaaacctcatgctttcaccattttcagGTACTTGTACTTCTTTGAGAAAGGAATTCCGCAGATCACAAATACCGTGATTCAAGATTTGATTGAATTGATTAGAACGGAGAAGCAAAGTGATAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG