Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcataacctgaatattggaaggatgcacaaaattttgtattttttttctaacatagaccttttgcatctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTTCACACGGTTTTCACATGACAG

Basic information

species Zea mays
transcript GRMZM5G809695_T02
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G809695_T03 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os06g10230.1 (Oryza sativa), 3'ss of exon 21
gtaatttca-taacctgaatattg--gaaggatgcacaaaattttgtattttttttctaacatagaccttttgcatctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTTCACACGGTTTTCACATGACAG
|||| || | ||||| ||| |||   |||| ||   |   | | | | ||||||  || ||||   |  | ||  | | ||  ||||||||| || || |||||||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||
gtaagttgaataaccagaaaatttttgaagcatatgctccagtatatgttttttg-ctcacattatctatctgt-tttatgatcagAAATGTATCCTATAATAATTTGGCTGGTGTTGTACCTACTGATAACAACTTCTCACGGTTTTCGCCTGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71769229|gb|DR967166.1|DR967166
EST:     ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT                         AAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
genomic: ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTTgtaatttcat ... ctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
EST: gi|211021287|gb|FL334113.1|FL334113
EST:     ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT                         AAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
genomic: ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTTgtaatttcat ... ctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
EST: gi|211538240|gb|FL353975.1|FL353975
EST:     ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT                         AAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
genomic: ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTTgtaatttcat ... ctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
EST: gi|28873715|gb|CB329664.1|CB329664
EST:     ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT                         AAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
genomic: ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTTgtaatttcat ... ctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
EST: gi|31405872|gb|CD484604.1|CD484604
EST:     ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT                         AAATGTGTCATACAATAAT
genomic: ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTTgtaatttcat ... ctttggacagAAATGTGTCATACAATAAT
EST: gi|32164946|gb|CD670264.1|CD670264
EST:     ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT                         AAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT
genomic: ATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTTgtaatttcat ... ctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcacaaaattttgtattttttttctaacatagaccttttgcatctttggacagAAATGTGTCATACAATAATTTGGCTGGTGCTGTCCCTACTGACAACAACTTCACACGGTTTTCACATGACAG
                       ttctaac  putative branch site (score: 1)
                                   ccttttgcatcttt  putative PPT
      aaaattttgtattttt  TA-rich tract