Sequence
atgc intronic sequence ATGC exonic sequencegtatatttattcttcaaaattttaagggaattctgtgtccattcttttcatttgaaactatggtcttagtttattaatctttcagGTTGCCGAATTCAAGAAATTCATTGAAGATATGGCTGCTGCTAGCCTCCGCTGTGTTGCGTTTGCCTATAGAACTCATGAGATGGATGATGTTCCAGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G391042_T02 (Zea mays), 3'ss of exon 21
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 3'ss of exon 21
gtatatttattcttcaaaattttaagggaattctgtgtccattcttttcatttgaaactatggtcttagt-----ttattaatc-tttcagGTTGCCGAATTCAAGAAATTCATTGAAGATATGGCTGCTGCTAGCCTCCGCTGTGTTGCGTTTGCCTATAGAACTCATGAGATGGATGATGTTCCAGACG
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--------------gtaaatatccattcaatcttttgta-attcacttattttcatattatggttttgttggtgacaattagttgcttcagATTAGTGAATTCAAGAAATTCATAGAAGATATGGCTGCTTCGAGCCTCCGGTGTGTTGCCTTTGCTTATAGAACATATGAGATGGTTGATGTCCCAAGTG
upper sequence: GRMZM2G391042_T02 (Zea mays), 3'ss of exon 21
lower sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 23
------gtatatttattcttcaaaattttaag-ggaattctgtgtccattcttttca---tttgaaactatggtcttagtttattaat-----ctttcagGTTGCCGAATTCAAGAAATTCATTGAAGATATGGCTGCTGCTAGCCTCCGCTGTGTTGCGTTTGCCTATAGAACTCATGAGATGGATGATGTTCCAGACG
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aagcaaatacaagtattacatgaactgttggatggaatttgattcttgtttttgactgattttgataatgttctcttaattaaatttttctggctcgcagATGTCAACTTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCGATTGCCTATAGATCATATGAAATGAAGAATGTTCCAACTA
upper sequence: GRMZM2G391042_T02 (Zea mays), 3'ss of exon 21
lower sequence: GLYMA13G00420.1 (Glycine max), 3'ss of exon 21
-----gtatatttattcttcaaaattttaag-ggaattctgtgtccattcttttca---tttgaaactatggtctta------gtttattaatctttcagGTTGCCGAATTCAAGAAATTCATTGAAGATATGGCTGCTGCTAGCCTCCGCTGTGTTGCGTTTGCCTATAGAACTCATGAGATGGATGATGTTCCAGACG
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atcaaatacaagtattacatgaactgttggatggcatttgattattgttttttactgattttgataatgttccctaaagtgaagtttttctggctcacagATGTCAACTTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCGATTGCATATAGATCATATGAAATGAAGAATGTTCCAACTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctgtgtccattcttttcatttgaaactatggtcttagtttattaatctttcagGTTGCCGAATTCAAGAAATTCATTGAAGATATGGCTGCTGCTAGCCTCCGCTGTGTTGCGTTTGCCTATAGAACTCATGAGATGGATGATGTTCCAGACG
tattaat putative branch site (score: 2)
tctttc CT-rich tract
ttagtttattaatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatttattcttcaaaattttaagggaattctgtgtccattcttttcatttgaaactatggtcttagtttattaatctttcagGTTGCCGAATTCAAGAAATTCATTGAAGATATGGCTGCTGCTAGCCTCCGCTGTGTTGCGTTTGCCTATAGAACTCATGAGATGGATGATGTTCCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA