1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gtgattacgattcatttgataaccttattagttcgtgaacttaggggattacgtgattcgtcagaaaaaagaatgatagctacttttttctctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCAAGATGCAGACATGGGAAGGAAGAACGAATCGTGATCCCAAGAAAAGAAT
species | Zea mays |
transcript | GRMZM2G318860_T02 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: GCTTACTCAAGAAAAATGGATGATGATGCCAACTGCCAAGCCTCGTGATG GATTTTTAGTCTCTCGTTACGGCCTCACACTTTCCTTGGCAAGCAGAACCAEST: gi|78075263|gb|DV503697.1|DV503697
genomic: GCTTACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATGgtatgtgtgc ... tctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCA
EST: GCTTACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATG GATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCAEST: gi|5917470|gb|AW054273.1|AW054273
genomic: GCTTACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATGgtatgtgtgc ... tctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCA
EST: ACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATG GATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCAEST: gi|5928929|gb|AW056221.1|AW056221
genomic: ACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATGgtatgtgtgc ... tctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCA
EST: ACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATG GATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCAEST: gi|28873574|gb|CB329545.1|CB329545
genomic: ACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATGgtatgtgtgc ... tctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCA
EST: GCTTACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATG GATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCA
genomic: GCTTACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGATGgtatgtgtgc ... tctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCA
ggattacgtgattcgtcagaaaaaagaatgatagctacttttttctctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCAAGATGCAGACATGGGAAGGAAGAACGAATCGTGATCCCAAGAAAAGAAT
ctacttttttctctat CT-rich tract
aaaaaagaatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattacgattcatttgataaccttattagttcgtgaacttaggggattacgtgattcgtcagaaaaaagaatgatagctacttttttctctataacagGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCTGGGCAAGCAGAAGCAAGATGCAGACATGGGAAGGAAGAACGAATCGTGATCCCAAGAAAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa