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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctatgtaggcttcaccaaactttagttgctatcaggatgattggtttttgtgtgtaaataagaatctcatctgctaagtgtgtattatcttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAGGACCTCAGCAATCATGTTCAAATTGAGAACATCGTCATTGAATCGTTTC

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T01 (Zea mays), 3'ss of exon 21
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 3'ss of exon 21
cctatgtaggcttcaccaaactttagttgctatcaggatgattggtttttgtgtg-taaataagaatctcatc-tgctaag-tgtgtat-tatcttcatct--cagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAGGACCTCAGCAATCATGTTCAAATTGAGAACATCGTCATTGAATCGTTTC
     | ||  ||    |    ||| |||| || |     | |   |    | || |   ||  | |||| |  |  | || ||  |   ||||||  | |  ||||||||||| ||||||||||| |||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||| || |||||||| || ||||
-----gaagtattagttatttattaattgc-atgaattcaaataactcaaatatgatctctatcattctccttgtattcagctgactgcctatctttgtttaccagGCTAAACAGCACATGGCCTTGTTATGTTTGGGAGAAATTGGAAGAAGGAAGGACCTCAGCAATCATGCTCAAATTGAGAATATTGTCATTGAGTCATTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14191174|gb|BG833404.1|BG833404
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTGCTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|14191175|gb|BG833405.1|BG833405
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTGCTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|91877710|gb|EB407667.1|EB407667
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|211482093|gb|FL282810.1|FL282810
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|67019143|gb|CO447892.1|CO447892
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|31354241|gb|CD438598.1|CD438598
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|78119497|gb|DV537881.1|DV537881
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|71448044|gb|DR829094.1|DR829094
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|31364294|gb|CD448649.1|CD448649
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtgtgtaaataagaatctcatctgctaagtgtgtattatcttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAGGACCTCAGCAATCATGTTCAAATTGAGAACATCGTCATTGAATCGTTTC
                                           tcttcatctc  CT-rich tract
          taaataagaat  TA-rich tract