1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tatattttgcaaattggtcggatgcagtgcacacggaaggtagatttctgttttcaccttatgcggaacatttcgtaaagatcaaatttattatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGATTCCGCTTCAAATGGTCCTGTTGCTGGAAGCACAAACAGTCAATCAAG
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|31362644|gb|CD447001.1|CD447001
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|211132356|gb|FK982423.1|FK982423
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|78543683|gb|DV621181.1|DV621181
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|211033868|gb|FL466120.1|FL466120
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACMCCACTGAAGCCG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|19769804|gb|BQ034525.1|BQ034525
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: CAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|24768960|gb|CA404089.1|CA404089
genomic: CAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|37400988|gb|CF637855.1|CF637855
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: ATGACACCACTGAAGCCG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|71773970|gb|DR971858.1|DR971858
genomic: ATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|149108496|gb|EE189682.2|EE189682
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTTTTATTTTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|14243758|gb|BG841389.2|BG841389
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|211006912|gb|FL435020.1|FL435020
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|26455909|gb|CA827492.1|CA827492
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|31355296|gb|CD439653.1|CD439653
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|6989671|gb|AW447884.1|AW447884
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGGGGTCAGCTTTTGEST: gi|56382295|gb|CV984964.1|CV984964
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAAGTCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|31357385|gb|CD441742.1|CD441742
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|149096022|gb|EE181696.2|EE181696
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|67026008|gb|CO454757.1|CO454757
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|87151847|gb|DY396636.1|DY396636
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGGACACCAAGCCGCEST: gi|24769886|gb|CA405015.1|CA405015
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGC
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|16926444|gb|BM079512.1|BM079512
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|19769907|gb|BQ034628.1|BQ034628
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACTCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|5296189|gb|AI782869.1|AI782869
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGEST: gi|211132361|gb|FK982428.1|FK982428
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCGAACACCAAGCCGCTCAAGTGAGGACTGGAGGTCAGCTTTTGEST: gi|109637318|gb|EC590863.1|EC590863
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTG
EST: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCG AGAGCCCTCAAACACCAAGTCGCTCAGGTGGGGACTGGGAGGTCAGCTTTT
genomic: TGATAACAGGGCATCTGTTTCCTCTTATTCTAATGACACCACTGAAGCCGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGG-AGGTCAGCTTTT
ttctgttttcaccttatgcggaacatttcgtaaagatcaaatttattatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGATTCCGCTTCAAATGGTCCTGTTGCTGGAAGCACAAACAGTCAATCAAG
atttcgtaaagatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattttgcaaattggtcggatgcagtgcacacggaaggtagatttctgttttcaccttatgcggaacatttcgtaaagatcaaatttattatttgcagAGAGCCCTCGAACACCAACCCGCTCAGGTGAGGACTGGAGGTCAGCTTTTGATTCCGCTTCAAATGGTCCTGTTGCTGGAAGCACAAACAGTCAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - ttttgca
- - - - - - - - - -ggatgca
- - - - - - - - - - - - - - gcacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatcaaa