Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtcgatctcttagcacccatttcactcgtgaaaaatgccgccgaactgcatttcaaccttgttctcttcctgtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTG

Basic information

species Zea mays
transcript GRMZM2G155384_T03
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 3'ss of exon 21
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 3'ss of exon 22
gtgagtgtcgatctcttagcacccatttcactcgtgaaaaatgccgccgaactgcatttcaaccttgttctcttcctgtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTG
|||||| | |      |||  |   || ||          ||  |    ||    | | |  |  | || | ||   || |    || ||||| ||||| |||||||| || ||  | || || ||||| |||||||| |||||||| |||||||||||||||||||| || |||||||| ||| ||
gtgagtatag-----ctagtgctatttacatctactgtttattgcattcaatattaatccttcaattttttgtttgggtgt----agAATGGCCCTTGGAGGCCTTGTTACTGTATTGCATGCTTGCCTCGATATGAAATCCACCATTCTAGGGAAATACCACTACATTCTTTACATTATCGTCTTG

upper sequence: GRMZM2G155384_T03 (Zea mays), 3'ss of exon 21
lower sequence: EFJ26022 (Selaginella moellendorffii), 3'ss of exon 21
gtgagtgtcgatctcttagcacccatttcactcgtgaaaaatgccgccgaactgcatttcaaccttgttctct-tcctgtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTG
                           | |     || |  || |  |  ||  |  ||    |||| ||  | ||  | ||  | |||   ||  | |  ||| ||||  ||||||| || |||||| | ||||||||  ||| |||||||||||| ||||||||| | ||||||  | | || || 
--------------------------gtaagcatcgacacttgactgcttacacctctttgttcttgctcaatatctcgcttgtttagGCCTGCCATCGCCGGCATTGTTGCCGTTCTTCATGCGTGCTTGGATATGAAAGCCATCATCCTAGGGAAGTACCACTACGTTCTCTACTATCTCGTTCTA

upper sequence: GRMZM2G155384_T03 (Zea mays), 3'ss of exon 21
lower sequence: EFJ14427 (Selaginella moellendorffii), 3'ss of exon 21
gtgagtgtcgatctcttagcacccatttcactcgtgaaaaatgccgccgaactgcatttcaaccttgttctcttcctgtttc-ctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTG
               | |||| | |   |||| |         | ||  ||   |  ||    |||| ||  |  || | |   | |||   ||  |    ||| || |  ||||||| || |||||| | ||||||||  ||| |||||||||||| ||||||||| | ||||||  | | || || 
--------------gtaagcatcga---cacttg--------actgcttaaac-ctctttgttcttgctcaatatctctcttgtttagGCCTGCCATCTCCGGCATTATTGCCGTTCTTCATGCGTGCTTGGATATGAAAGCCATCATCCTAGGGAAGTACCACTACGTTCTCTACTATCTCGTTCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32850124|gb|CD989805.1|CD989805
EST:     GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCC                         GATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
genomic: GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCCgtgagtgtcg ... gtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
EST: gi|211100370|gb|FL070848.1|FL070848
EST:     GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCC                         GATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
genomic: GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCCgtgagtgtcg ... gtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
EST: gi|60347371|gb|DN214344.1|DN214344
EST:     GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCC                         GATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
genomic: GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCCgtgagtgtcg ... gtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
EST: gi|32867559|gb|CF007241.1|CF007241
EST:     GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCC                         GATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
genomic: GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCCgtgagtgtcg ... gtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
EST: gi|211100371|gb|FL070849.1|FL070849
EST:     GGCTTGTTGACCCYTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCC                         GATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA
genomic: GGCTTGTTGACCCTTTCTCCATACCATTCCGATAGATTTCTCCTCTCCCCgtgagtgtcg ... gtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgaaaaatgccgccgaactgcatttcaaccttgttctcttcctgtttcctcagGATGGCACTTGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTG
                        tttcaaccttgttctc  CT-rich tract
                       atttcaa  TA-rich tract