1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...atgtgatattttgtctcaagtttagacttggcatcgctgtcttcaaattgcacgtctaagtttacgaaatgtgcactgatctgttccatttgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTCAACGTAGAAGCTGCTGTTGCCT
species | Zea mays |
transcript | GRMZM2G141587_T05 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CCAGCAA-GTCCCTGAGATTGTAGCATTGTGGAAAAAG-ATCTCCAGAAG GTAA-CTCAAA-GCAGCAGAGTCGCTGGCTGATCCTA-TGAGTACCCAA-CEST: gi|32931477|gb|CF036289.1|CF036289
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTAEST: gi|211291668|gb|FL235608.1|FL235608
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTA
EST: CAAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCCTA-TGAGTACCCAAAEST: gi|60337474|gb|DN204447.1|DN204447
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCC-TAATGAGTACCCAAA
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCATAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|6095376|gb|AW120043.1|AW120043
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCA
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCA
aattgcacgtctaagtttacgaaatgtgcactgatctgttccatttgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTCAACGTAGAAGCTGCTGTTGCCT
cactgat putative branch site (score: 477)
ttccatttgcttttt putative PPT
taagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgatattttgtctcaagtttagacttggcatcgctgtcttcaaattgcacgtctaagtttacgaaatgtgcactgatctgttccatttgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTCAACGTAGAAGCTGCTGTTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - -aattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtgc