1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...atgtgatattttgtctcaagtttagacttggcatcgctgtcttcaaattgcacgtctaagtttacgaaatgtgcactgatctgttccatttgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTCAACGTAGAAGCTGCTGTTGCCT
species | Zea mays |
transcript | GRMZM2G141587_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCCTA-TGAGTACCCAAAEST: gi|32931477|gb|CF036289.1|CF036289
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCC-TAATGAGTACCCAAA
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTAEST: gi|56382379|gb|CV985048.1|CV985048
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTA
EST: CAAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|78114292|gb|DV532681.1|DV532681
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|32795452|gb|CD947688.1|CD947688
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: GATCCCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|32808372|gb|CD960606.1|CD960606
genomic: GATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: GATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|32791813|gb|CD944049.1|CD944049
genomic: GATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: GATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|71438645|gb|DR819695.1|DR819695
genomic: GATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: AAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|60337474|gb|DN204447.1|DN204447
genomic: AAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCATAGTCGCTGGCTGATCCTAATGAGTACCCAAACEST: gi|6095376|gb|AW120043.1|AW120043
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAAC
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCA
genomic: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAGgtcttctgtc ... tgctttttagGTAAACTCAAAAGCAGCA
aattgcacgtctaagtttacgaaatgtgcactgatctgttccatttgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTCAACGTAGAAGCTGCTGTTGCCT
cactgat putative branch site (score: 3)
ttccatttgcttttt putative PPT
taagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgatattttgtctcaagtttagacttggcatcgctgtcttcaaattgcacgtctaagtttacgaaatgtgcactgatctgttccatttgctttttagGTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTCAACGTAGAAGCTGCTGTTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT