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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataccatctcctaactttttgttggttaatctgatattcactagaatttttaaaatgtctgtttctgtgagacccacttggaacttttaatatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGCTGTGTTGCTTTTGCATACTGTTCCTTTGACATTGAAAAGATCCCAATGG

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132712_T03 (Zea mays), 3'ss of exon 22
lower sequence: LOC_Os08g40530.2 (Oryza sativa), 3'ss of exon 6
gtaataccatctcctaactttttgttggttaatctgatattcactagaatttttaaaatgtctgtttctgtgag--acccacttggaacttttaatatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGCTGTGTTGCTTTTGCATACTGTTCCTTTGACATTGAAAAGATCCCAATGG
                           ||   | ||||    | |  | |   |  | |   | ||  ||| |   |    |||     ||  ||| ||||||| |  |||||| ||||| |||||| |||||||||| | ||| ||||||||| || |||||||||||||| ||| | | ||| |||||||  ||||||| ||
---------------------------gtacgtgtgattcctaatttactgactgca-tactttttattgttaattattttcttaattgttaaaatttttgcagTATAATGAATGCAAGAAATCAATTGAAGACATGGCAACGAGTTCATTACGATGCGTTGCTTTTGCATATTGTCCTTGTGAAATTGAAAGAATCCCAAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211422272|gb|FK992813.1|FK992813
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422266|gb|FK992807.1|FK992807
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422265|gb|FK992806.1|FK992806
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422271|gb|FK992812.1|FK992812
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422274|gb|FK992815.1|FK992815
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422270|gb|FK992811.1|FK992811
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422268|gb|FK992809.1|FK992809
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422273|gb|FK992814.1|FK992814
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC
EST: gi|211422275|gb|FK992816.1|FK992816
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGNAGATCAATTCGAAGACATGGGAGCAAATTCATTAC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAG-AGATCAAT-CGAAGACATGGGAGCGAATTCATTAC
EST: gi|31350151|gb|CD434508.1|CD434508
EST:     AAAGCTGGCTTTCCGTCGATGGCTCGGTTCAGTCAATGAGTGCTGAGAAG                         CACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCAAATTCATTACGC
genomic: AAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGAGTGCTGAGAAGgtaataccat ... atatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttttaaaatgtctgtttctgtgagacccacttggaacttttaatatttgcagCACGATGAATTCAAGAGATCAATCGAAGACATGGGAGCGAATTCATTACGCTGTGTTGCTTTTGCATACTGTTCCTTTGACATTGAAAAGATCCCAATGG
                                        ttttaat  putative branch site (score: 3)
                                     aacttttaatattt  TA-rich tract