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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatgatagatccatcatcttcgaaaaaagtgatttattctattattttctgctagtgtaacgaacattagtgaagttgtgccacttatccatttacagGTCTGGCAACTTTACGAGGAAGACCATCCGCTGGACATTGCGGATCCCAAGCTCACAGAATTCGATAGTGTCGAGTTGCTCCGTGCCATCCGCATCGCCC

Basic information

species Zea mays
transcript GRMZM2G126858_T01
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74246488|gb|DT654402.1|DT654402
EST:     CGAACTATGATGGTAAGCTTGACCAAGACATGGCTTATCTTTTAGAATGG                         GTCTGGCAACTTTACGAGGAAGACCATCCGCTGGACATTGCGGATCCCAAG
genomic: CGAACTATGATGGTAAGCTTGACCAAGACATGGCTTATCTTTTAGAATGGgtaagttttc ... ccatttacagGTCTGGCAACTTTACGAGGAAGACCATCCGCTGGACATTGCGGATCCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttctgctagtgtaacgaacattagtgaagttgtgccacttatccatttacagGTCTGGCAACTTTACGAGGAAGACCATCCGCTGGACATTGCGGATCCCAAGCTCACAGAATTCGATAGTGTCGAGTTGCTCCGTGCCATCCGCATCGCCC
           gtgtaac  putative branch site (score: 3)
                                        cttatcc  putative PPT
                   aacatta  TA-rich tract