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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaatgccgtctctgcttctggttgctccgtttgcacttggcagtatgattatccttggcagcagggagcggcgatgtttgaattatgcatttttttctgttgagcctagatcatgactgtgctgggctcgttcaattccactgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGAAGCGAGGACATCCGCCCTCTTAGCATAGATGACTTCAAATCTGCCCATG

Basic information

species Zea mays
transcript GRMZM2G126453_T01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126453_T01 (Zea mays), 3'ss of exon 21
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 26
-----------gtacacaatgccgtct-ctgcttctggttgctccgtttgcacttggcagtatgattatccttggcagcagggagcggcgatgtttgaattatgcatttttttctgttgagcctagatcatgactgtgctgggctc--gttcaattccactgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGAAGCGAGGACATCCGCCCTCTTAGCATAGATGACTTCAAATCTGCCCATG
            |  ||  ||| |||  |||              |||||   || |   |     | || || |  |||           | |   |    |  | | ||   ||   |  ||   |  |   | ||||    |   ||||  ||||  | | | |||||||| ||| |||| ||| ||||||| ||||| ||||||||||| ||||| || |||||||| || ||||| | | ||||||| ||||||||||||||||
gttggcattgcttgtaccttgctgtcaactgaagacctagataaagtttgttttttgggtttatgctgtctttagatgcactccttattcttctactacaattatactgttaagtgacaacgctttttattttatatgctaatatggggttcgcttcctttctattcagGAGAAAAATGTGGCAAAAGCAGAAGGCAGGCCTGAGCCTGCATTGTATGGTAGTGAGGACATTCGTCCTCTGACCTTAGATGATTTCAAATCTGCCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32921157|gb|CF025969.1|CF025969
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
EST: gi|32920203|gb|CF025015.1|CF025015
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
EST: gi|211048841|gb|FL187601.1|FL187601
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGG
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGG
EST: gi|211048838|gb|FL187598.1|FL187598
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
EST: gi|32921345|gb|CF026157.1|CF026157
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
EST: gi|211048837|gb|FL187597.1|FL187597
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
EST: gi|32920665|gb|CF025477.1|CF025477
EST:     TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG                         GAGAAGAGTTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA
genomic: TGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAGgtacacaatg ... ctgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttgagcctagatcatgactgtgctgggctcgttcaattccactgtgtgcagGAGAAGAATTTGGCTAAAACAGAAGGTAGGCCGGAGCCTGCATTATATGGAAGCGAGGACATCCGCCCTCTTAGCATAGATGACTTCAAATCTGCCCATG
                                        ttccact  CT-rich tract
                                   ttcaatt  TA-rich tract