1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tggtatttgtggtctcaagtttagatttgagcataattgtcttcaaactgcaggtctaactttatgaaatgtgcattgttttgttccatttgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTGAATGTAGAAGCTGCTGTTGCTC
species | Zea mays |
transcript | GRMZM2G124886_T04 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CTAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTEST: gi|32794634|gb|CD946870.1|CD946870
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGT
EST: GATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|211291669|gb|FL235609.1|FL235609
genomic: GATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|67014399|gb|CO443148.1|CO443148
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|19822105|gb|BQ048129.1|BQ048129
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGAATGTAGCGTTGTGGAAATAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|19822050|gb|BQ048074.1|BQ048074
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|26455841|gb|CA827424.1|CA827424
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GGAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|19821970|gb|BQ047979.1|BQ047979
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|5847331|gb|AW000410.1|AW000410
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|111145650|gb|EE257974.1|EE257974
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCCAAAEST: gi|19822070|gb|BQ048094.1|BQ048094
genomic: -TAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCC-AAA
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|19822158|gb|BQ048182.1|BQ048182
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|32929286|gb|CF034098.1|CF034098
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CCAGCAAAGTCCCTGAGATTGTAGCATTGTGGAAAAAGGATCTCCAGAAG GTAAACTCAAAAGCAGCAGAGTCGCTGGCTGATCCTAATGAGTAEST: gi|19821973|gb|BQ047982.1|BQ047982
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTA
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACEST: gi|26456008|gb|CA827591.1|CA827591
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
EST: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAG GTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
genomic: CTAGCAAAGTCCCTGAGATTGTAGCGTTGTGGAAAAAGGATCTCCAGAAGgtcttctgtg ... tgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAAC
aactgcaggtctaactttatgaaatgtgcattgttttgttccatttgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTGAATGTAGAAGCTGCTGTTGCTC
gtctaac putative branch site (score: 290)
ttccatttgcttttt putative PPT
taactttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtatttgtggtctcaagtttagatttgagcataattgtcttcaaactgcaggtctaactttatgaaatgtgcattgttttgttccatttgctttttagGTAAACCCAAAAGCAGCGGAGTCCCTGGCTGATCCTAATGAGTACCCAAACTTATTTGAAGACTGGCAGATTGCTCTGAATGTAGAAGCTGCTGTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT