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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgagactcacagtgtgctttgttgttaagtatgcgcttctgtagcttctaagatgatttatattttcgtatgttagGGCATTGAATTTGGGAGGCAACCAATGGTCACATCCTCCACTTTG

Basic information

species Zea mays
transcript GRMZM2G115975_T02
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32936986|gb|CF041805.1|CF041805
EST:     GTCAACAGAGAACACAC-CTGTGTCCATCAACGTCCCAAAGTTGGCAGAG                         GGCATTGAATTTGGGA
genomic: GTCAACAGAGAACAC-CTCTGTGTCCATCAACGTCCCAAAGCTGGCAGAGgtaagcgaga ... cgtatgttagGGCATTGAATTTGGGA
EST: gi|60401279|gb|DN234086.1|DN234086
EST:     TGTCAACAGAGAACACCTCTGTGTCCATCAACGTCCCAAAGCTGGCAGAG                         GGCATTGAATTTGGGAGGCAACCAATGGTCACATCCTCCACTTTG
genomic: TGTCAACAGAGAACACCTCTGTGTCCATCAACGTCCCAAAGCTGGCAGAGgtaagcgaga ... cgtatgttagGGCATTGAATTTGGGAGGCAACCAATGGTCACATCCTCCACTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttaagtatgcgcttctgtagcttctaagatgatttatattttcgtatgttagGGCATTGAATTTGGGAGGCAACCAATGGTCACATCCTCCACTTTG
                                       tattttc  CT-rich tract
                        ttctaagatgatttat  TA-rich tract