1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtacgaagattcttgatcctctccttttatagaagttcattggagggaaacaattatctgacactgattccatgtcttcctatgttggaaaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAAATGTGCTAAGAGAGTTTGAATCAAAACAG
species | Zea mays |
transcript | GRMZM2G113202_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTG GTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAAEST: gi|211102976|gb|FL307623.1|FL307623
genomic: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTGgtacgaagat ... aaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAA
EST: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTG GTATTCGTGGCAATCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAAEST: gi|76912488|gb|DV164756.1|DV164756
genomic: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTGgtacgaagat ... aaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAA
EST: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTG GTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAAEST: gi|74243522|gb|DT651436.1|DT651436
genomic: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTGgtacgaagat ... aaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAA
EST: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTG GTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAA
genomic: AAGAAGGTATTTCATAAATGTCCGGAAGGCCTCAGTGATAATACAGTCTGgtacgaagat ... aaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAA
gggaaacaattatctgacactgattccatgtcttcctatgttggaaaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAAATGTGCTAAGAGAGTTTGAATCAAAACAG
cactgat putative branch site (score: 214)
aaaatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaagattcttgatcctctccttttatagaagttcattggagggaaacaattatctgacactgattccatgtcttcctatgttggaaaatatgtagGTATTCGTGGCAGTCTTGTTCGAAGATGTAATGGCAATATTGATCTAATAAATGTGCTAAGAGAGTTTGAATCAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA