1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagattcccttttgtgatgtgttccgcataaacaattttaagattcttaactttcgggaagttggtgattgcctatctgttcccattcttgtcccctgattccgatgttatcagtcatctttgcaacgttcttatctttttctggtgtgacacttgtttcggtgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCATCTACCTCAGCATCTGCTGATTCTTCCACTAGCAATGTAAATGCTGATG
species | Zea mays |
transcript | GRMZM2G107696_T02 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TCTCCTTTGGATTCCAGGAAGGCATTGCCATAAAGGCCCTGAAAGCTTCT AGTGGTAATATCGAGAAAGCTACAGACTGGATATTCAGCCAACCCGAAGCAEST: gi|4688518|gb|AI637188.1|AI637188
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TNTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|211494928|gb|FL217185.1|FL217185
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT AGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAACAEST: gi|116819768|gb|EC862916.1|EC862916
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGGCATTGCCATAAAGGCCCTGAAAGCTTCT AGTGGTAATATAGAGAAAGCT-CAGACTGGATTTTCEST: gi|14244301|gb|BG842323.2|BG842323
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTC
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|149014867|gb|EE044578.2|EE044578
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|60345352|gb|DN212325.1|DN212325
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|60339263|gb|DN206236.1|DN206236
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|101383461|gb|EB813786.1|EB813786
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|71595705|gb|DR906456.1|DR906456
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|60349614|gb|DN216587.1|DN216587
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: GATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|60350109|gb|DN217082.1|DN217082
genomic: GATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|50331230|gb|CO526356.1|CO526356
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTTT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCAEST: gi|71330489|gb|DR802011.1|DR802011
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
tctttgcaacgttcttatctttttctggtgtgacacttgtttcggtgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCATCTACCTCAGCATCTGCTGATTCTTCCACTAGCAATGTAAATGCTGATG
ttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcccttttgtgatgtgttccgcataaacaattttaagattcttaactttcgggaagttggtgattgcctatctgttcccattcttgtcccctgattccgatgttatcagtcatctttgcaacgttcttatctttttctggtgtgacacttgtttcggtgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCATCTACCTCAGCATCTGCTGATTCTTCCACTAGCAATGTAAATGCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT