1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...cctgacttgcggttgagcagctgatgcagtatttcacgcttcaacattttttgttaagatgagctgagtacctgacggtgcagctttgaactttgtccagATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAGTGTATTTCCCTTGCATGCCCAGTCTTCTATGAACGGAGGAAAGTTCAGA
species | Zea mays |
transcript | GRMZM2G081639_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TCGCTGGCAGAACTTCAAAGTTGGAGCGAGAAATCCAACATCTTGCTGCT ATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAGEST: gi|83279143|gb|DV943151.1|DV943151
genomic: TCGCTGGCAGAACTTCAAAGTTGGAGCGAGAAATCCAACATCTTGCTGCTgtaagttttt ... ctttgtccagATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAG
EST: TCGCTGGCAGAACTTCAAAGTTGGAGCGAGAAATCCAACATCTTGCTGCT ATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAGEST: gi|4388183|gb|AI491355.1|AI491355
genomic: TCGCTGGCAGAACTTCAAAGTTGGAGCGAGAAATCCAACATCTTGCTGCTgtaagttttt ... ctttgtccagATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAG
EST: TCGCTGGCAGAACTTCAAAGTTGGAGCGAGAAATCCAACATCTTGCTGCT ATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAG
genomic: TCGCTGGCAGAACTTCAAAGTTGGAGCGAGAAATCCAACATCTTGCTGCTgtaagttttt ... ctttgtccagATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAG
attttttgttaagatgagctgagtacctgacggtgcagctttgaactttgtccagATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAGTGTATTTCCCTTGCATGCCCAGTCTTCTATGAACGGAGGAAAGTTCAGA
acctgac putative branch site (score: 9)
ctttgtcc putative PPT
ttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgacttgcggttgagcagctgatgcagtatttcacgcttcaacattttttgttaagatgagctgagtacctgacggtgcagctttgaactttgtccagATATGTGGCCATTGTGGCGGTGCAGACTGGATTGTTGAAAGTGGAGTCAAGTGTATTTCCCTTGCATGCCCAGTCTTCTATGAACGGAGGAAAGTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - gcggttg
- - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - cgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcag