Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcctggttctgagtattgcggcagtcttggttctgagtattgcagcacacagtctgcttctcttattttattgcccccctacaacatcttagtagataacgacccatttactgattcttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCAGAACAGCCGTCGTATATGCACCTGCAGGTGCAGAGGACGAATAGGGCA

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60347950|gb|DN214923.1|DN214923
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|60338294|gb|DN205267.1|DN205267
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|149040592|gb|EE046833.2|EE046833
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTTTCGGTTTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|78024920|gb|DV493307.1|DV493307
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|60394366|gb|DN227236.1|DN227236
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|4966932|gb|AI691970.1|AI691970
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|211101479|gb|FL457333.1|FL457333
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCTGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|113702675|gb|EE680179.1|EE680179
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCTGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|28576077|gb|CB281969.1|CB281969
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCCCTGCT                         GACTGGCCGCATGACACCAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|91878000|gb|EB407957.1|EB407957
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|60345781|gb|DN212754.1|DN212754
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: gi|101386687|gb|EB815360.1|EB815360
EST:     TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT                         GACTGGCCGCATGACAACAGGCCGTGTTCTTTTTCGGTTTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcccccctacaacatcttagtagataacgacccatttactgattcttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCAGAACAGCCGTCGTATATGCACCTGCAGGTGCAGAGGACGAATAGGGCA
                                     tactgat  putative branch site (score: 2)
                                           ttcttatt  CT-rich tract
                                          attcttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtcctggttctgagtattgcggcagtcttggttctgagtattgcagcacacagtctgcttctcttattttattgcccccctacaacatcttagtagataacgacccatttactgattcttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCAGAACAGCCGTCGTATATGCACCTGCAGGTGCAGAGGACGAATAGGGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA