1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ccttaaagttgagcatacgtccgcagagatcacagaagatttatatttctttctactatcacttagtacatgctttaaattcattatttgcctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGAATTACCTGGATGCCTCCAAGGCAGTGTCCATAGACGAGTGCTAGGACC
species | Zea mays |
transcript | GRMZM2G069976_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGEST: gi|211124229|gb|FL321156.1|FL321156
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCTACTGEST: gi|166704876|gb|EG124324.1|EG124324
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGEST: gi|71298057|gb|DR785005.1|DR785005
genomic: TTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGEST: gi|211429970|gb|FL331477.1|FL331477
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGEST: gi|211520390|gb|FL360200.1|FL360200
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGEST: gi|211318393|gb|FL341250.1|FL341250
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGEST: gi|211186353|gb|FL348559.1|FL348559
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTG
EST: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAG GGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACT
genomic: TGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtatccaatc ... cctcatgcagGG-AAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACT
tttctttctactatcacttagtacatgctttaaattcattatttgcctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGAATTACCTGGATGCCTCCAAGGCAGTGTCCATAGACGAGTGCTAGGACC
tttgcctc CT-rich tract
tttaaattcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttaaagttgagcatacgtccgcagagatcacagaagatttatatttctttctactatcacttagtacatgctttaaattcattatttgcctcatgcagGGAAACACAAATGAAGAACTCCCGGAATTCCTCCTAGGTACCTGCCGACTGAATTACCTGGATGCCTCCAAGGCAGTGTCCATAGACGAGTGCTAGGACC
- - - - - -agcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgc