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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcttgcattactatgttctatattttcattgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAGGTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 22
-----------------gtaacatcttgcattactatgttctata-ttttcattgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAGGTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG
                  |         | |   ||| |  | |  |||| ||||||  |||| | || || ||         ||   ||  || |||||||||   ||| ||||  |||       |||||||||   || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||| |||||||| ||||| ||||||||| | || |
gtaaatcctccctcctctttgtgcacatcttctgtatttcttgtggttttaattgttagagcagccaattttttagaactatatgggattatttgagctttacagagctcccttt--ttg-------ttatttatgca-attacagATTGTAAGTGCATCTCAAGCTGGAGACATTCAGTTCCTTGATGTTAGAAGGGCATCTGAACCCTACCTCACTATTGAAGCACATAGGGGTTCATTAACGG

upper sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 21
--------------gtaacatcttgcattactatgttctata-ttttcattgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAGGTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG
               |         | |   ||| |  | || |||| ||||||  |||| | || || ||         ||   ||  || |||||||||   ||| ||||  |||       |||||||||   || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||| |||||||| ||||| ||||||||| | |  |
gtaaatcctccctctttgtgcacatcttctgtatttcttgtagttttaattgttagagcagccaattttttagaactttatgggattatttgagctttacagagctcccttt--ttg-------ttatttatgca-attacagATTGTAAGTGCATCTCAAGCTGGAGACATTCAGTTCCTTGATGTTAGAAGGGCATCTGAACCCTACCTCACTATTGAAGCACATAGGGGTTCATTAATGG

upper sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 16
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 3'ss of exon 22
gtaacatcttgcattactatgttctatattttcattgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAGGTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG
                                  ||    |  ||| |   | ||| ||   ||  |    | |  |||   |  | ||      |||         |  | ||| |   | |  |||||||| |||||||| ||||| || |||||||||||||| ||| | |||||  ||   ||  | ||||||||||| || || || || || ||||| ||||
---------------------------------gttacacacccaaatctctgattctc---gccagtcagtacaaaaggcatttagttactcacttg---------acatgtttgt---tgtctcagATTGTGAGCGCATCACAAGCAGGTGACATTCAGTTTCTGGATCTGAGAAGACCAAAGGAGACATACCTGACTATAGACGCGCATAGAGGATCACTGACAG

upper sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 16
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 22
----------------------------------------------------------------------------gtaacatcttgcattactatgttctatattttcattgttgaagca--acta-agttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAG-GTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG
                                                                             | | ||   |   |   ||  ||   ||||   |||   || ||  | || ||  |   ||| ||  || | |   |  ||  ||||    ||    ||| ||||  || |||   | |   | |  |||||||| || |||||||| ||||| ||||||||||| |||||||| ||||  | ||   |  || ||||| || ||||| || |||||||| || ||||| |
gtaaatggagcagcatgatggttacgtgcccttcttttttctggtgaaaatttgggtttatgattttctgcagcctatcaaatgcggttatttgatagtcctcatttctcttgaaaaatcattattatagcaaacatctaggtgtgatatatgtatagtcttac----cttgtcttgcttgg--ctgtttgactgtctttctc-cagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCC-TACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAGGTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG
                              tactatttatttat  TA-rich tract