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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgaaagttgaaaccgttgatttgacttctcacaaaaatgtctacattttgtctaaaagagtggtacattctttaagaaaaaattgatgtaactaccttcttgatccttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCAGCACTGGCTGCCTTATCTAATGCATTCAACCCATCCTTAAAACCCAAAA

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101399213|gb|EB821480.1|EB821480
EST:     CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG                         TCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
genomic: CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTGgtaagtttga ... ttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
EST: gi|211011730|gb|FL062983.1|FL062983
EST:     CGCATTCAATCCATCATCTCAACAAAGGCTG                         TCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
genomic: CGCATTCAATCCATCATCTCAACAAAGGCTGgtaagtttga ... ttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
EST: gi|211011729|gb|FL062982.1|FL062982
EST:     CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG                         TCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
genomic: CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTGgtaagtttga ... ttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
EST: gi|93281335|gb|EB673599.1|EB673599
EST:     CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG                         TCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
genomic: CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTGgtaagtttga ... ttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
EST: gi|149103859|gb|EE289270.2|EE289270
EST:     CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG                         TCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA
genomic: CATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTGgtaagtttga ... ttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtacattctttaagaaaaaattgatgtaactaccttcttgatccttcttttcagTCTAATGAGAGGCCTAAAAGCACAGGCGATGGACCCACGCAACGTGCCTCAGCACTGGCTGCCTTATCTAATGCATTCAACCCATCCTTAAAACCCAAAA
                              ctaccttcttgatcct  CT-rich tract
     attctttaagaaaaaa  TA-rich tract