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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgtggcacgtgatactgctctaggtacgcagatgtcaacttgttcctgacagaggtgaactaacttctgttatggccattacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT

Basic information

species Zea mays
transcript GRMZM2G032628_T01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032628_T01 (Zea mays), 3'ss of exon 21
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 21
gtaagttttgtggcacgtgatactgctctaggtacgcagatgtcaacttgttcctgacagaggtgaactaacttctgttatggccattacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCG--GGGTACTCGTT
|||||| |||   ||  ||| | |||     |||| |  || |     || || | |           |||| |||||| ||  |||| ||||||||| ||||| ||||| || ||||| || || ||||| |||||| | || |||||||| || || ||||||||||||| ||| ||| | |     |     |  
gtaagtcttgct-cagatgaaattgc-----gtac-cgtatattg-tgtgctctttat----------taacctctgttgtgctcattccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCAGAACCTGCGTTGTCTATGCTCCAGCGGAATGAGAACACCAAGAGGCAG--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37381825|gb|CF627810.1|CF627810
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31354152|gb|CD438509.1|CD438509
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31352159|gb|CD436516.1|CD436516
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67017922|gb|CO446671.1|CO446671
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGNC                         GACTGGTCGCATGATAATANGCCATATTCGTTCTCGGTT-ATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24767475|gb|CA402617.1|CA402617
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24765722|gb|CA400881.1|CA400881
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32808075|gb|CD960309.1|CD960309
EST:     GATCTATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24764942|gb|CA400103.1|CA400103
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31359215|gb|CD443572.1|CD443572
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24764657|gb|CA399821.1|CA399821
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67015582|gb|CO444331.1|CO444331
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67032289|gb|CO461038.1|CO461038
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTTTCGGTTTATACCCCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32798366|gb|CD950602.1|CD950602
EST:     GATCCCTCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24768732|gb|CA403861.1|CA403861
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32838528|gb|CD978206.1|CD978206
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67042631|gb|CO468886.1|CO468886
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24763965|gb|CA399135.1|CA399135
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32805113|gb|CD957349.1|CD957349
EST:     GATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTATTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|4804600|gb|AI665623.2|AI665623
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32798261|gb|CD950497.1|CD950497
EST:     GATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|166543055|gb|EG255623.1|EG255623
EST:     GCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCNCGGTTTATACACCAAGC
genomic: GCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31357545|gb|CD441902.1|CD441902
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACCCCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32848466|gb|CD988147.1|CD988147
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67022063|gb|CO450812.1|CO450812
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTTACCGGC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGGTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31359366|gb|CD443723.1|CD443723
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31348898|gb|CD433255.1|CD433255
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|5455664|gb|AI833354.1|AI833354
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCCCTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32803392|gb|CD955628.1|CD955628
EST:     GATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|166636931|gb|EG174303.1|EG174303
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCC
EST: gi|78027354|gb|DV495741.1|DV495741
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67026391|gb|CO455140.1|CO455140
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCTGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24764776|gb|CA399938.1|CA399938
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24763853|gb|CA399024.1|CA399024
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGGCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|5152759|gb|AI759057.1|AI759057
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31356764|gb|CD441121.1|CD441121
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32934900|gb|CF039712.1|CF039712
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATCCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67018661|gb|CO447410.1|CO447410
EST:     TATTTAGTGGAATTAGCAGGATCCATCACGCAACCGAGCACTTTACCGTC                         GACTGGTCGCATGATAATAG
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAG
EST: gi|24769475|gb|CA404604.1|CA404604
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|5058686|gb|AI737162.1|AI737162
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31362680|gb|CD447037.1|CD447037
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31350231|gb|CD434588.1|CD434588
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67017558|gb|CO446307.1|CO446307
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24765056|gb|CA400217.1|CA400217
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|5058574|gb|AI737050.1|AI737050
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32933088|gb|CF037900.1|CF037900
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31350932|gb|CD435289.1|CD435289
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32852038|gb|CD991719.1|CD991719
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32798562|gb|CD950798.1|CD950798
EST:     GATCCGTCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67043028|gb|CO469283.1|CO469283
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32799519|gb|CD951755.1|CD951755
EST:     GATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|67011365|gb|CO440114.1|CO440114
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCANCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGGTCTCGGTTT-TACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|4837487|gb|AI670577.1|AI670577
EST:     GCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: GCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|5343127|gb|AI795537.1|AI795537
EST:     TATTTGGNGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTC
EST: gi|24767830|gb|CA402966.1|CA402966
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32918039|gb|CF022851.1|CF022851
EST:     GGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: GGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|24767251|gb|CA402395.1|CA402395
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31349259|gb|CD433616.1|CD433616
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31352581|gb|CD436938.1|CD436938
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|32798121|gb|CD950357.1|CD950357
EST:     CCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: CCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|6012484|gb|AW061921.1|AW061921
EST:     TATTTGGTGGATTCAGCAGGATCCATCACGCAGCCGAGCACTTCCCCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|83278477|gb|DV942485.1|DV942485
EST:     TATTTGGTGGATTCAGCAGGATCCATCACGCAGCCGAGCAATTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTTGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|31362258|gb|CD446615.1|CD446615
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|6564265|gb|AW231887.1|AW231887
EST:     TATTTGGTGGATTCAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|6526754|gb|AW216035.1|AW216035
EST:     TATTTGGTGGATTCAGCAGGATCCATCACGCAGCCGAGCCCTTCACCGCC                         GACTGTTCGCATGATAATAGGCCATATTCGTTCTCGGTTTATACACCAAGC
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGC
EST: gi|213168446|gb|FM189757.1|FM189757
EST:     TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC                         GACTGNNNGCATGATAATAGGCCATATTCA
genomic: TATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 78

GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT


Block sizes: 47 (upstream exon), 42 (downstream exon)
Score: 11

GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 8

GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 373

GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCCgtaagttttg ... ttacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaacttgttcctgacagaggtgaactaacttctgttatggccattacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT
                        aactaac  putative branch site (score: 373)
                                            attactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttgtggcacgtgatactgctctaggtacgcagatgtcaacttgttcctgacagaggtgaactaacttctgttatggccattacttgcagGACTGTTCGCATGATAATAGGCCATATTCATTCTCGGTTTATACACCAAGCAGAACATGTGTCGTCTATGCTCCAGTGGAGTGATAGCGGGGTACTCGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG