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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaccaatcatttgcatgaccacaataaataaacgagttctgatactttctcttaaaaaatgtttgtgcagATATACTGAAACCATTGATGATCTGAGAGCACTGCATGACAAGAAGGGACAGAAGATCCTGAGAAAACAACAAATGTATTCAGGTTTTAGGGACAAATTA

Basic information

species Zea mays
transcript GRMZM2G025340_T02
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211018179|gb|FL213624.1|FL213624
EST:     AGTGCTCGTATTAAGAAATTAAAACAGAAATTTCAGCAAGAAAGCAGAAG                         ATATACTGAAACCATTGATGATCTGAGAGCACTGCATGACAAGAAGGGACA
genomic: AGTGCTCGTATTAAGAAATTAAAACAGAAATTTCAGCAAGAAAGCAGAAGgtctgaccaa ... gtttgtgcagATATACTGAAACCATTGATGATCTGAGAGCACTGCATGACAAGAAGGGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaccacaataaataaacgagttctgatactttctcttaaaaaatgtttgtgcagATATACTGAAACCATTGATGATCTGAGAGCACTGCATGACAAGAAGGGACAGAAGATCCTGAGAAAACAACAAATGTATTCAGGTTTTAGGGACAAATTA
                     ttctgat  putative branch site (score: 3)
                              tttctcttaaaaaat  TA-rich tract