1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
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...gaaagttgcagcattatgctgacaattcatcctttaaccagtaattgcaaaagggttgttttgttgaatttcctatctgatatcattttccaccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTAGTGCGGATTTATGGTGAAAATTCAGAGCTTTTAC
species | Zea mays |
transcript | GRMZM2G014788_T01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|211471071|gb|FL253119.1|FL253119
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|31361738|gb|CD446095.1|CD446095
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|71767170|gb|DR965107.1|DR965107
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|18965004|gb|BM661335.1|BM661335
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|22490517|gb|BU050440.1|BU050440
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|211266226|gb|FL159043.1|FL159043
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|31364326|gb|CD448681.1|CD448681
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|87152918|gb|DY397707.1|DY397707
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGEST: gi|67011597|gb|CO440346.1|CO440346
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
EST: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAG GATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
genomic: TTGCAGGTCCTTTGTATGATGACATAGTATATAAAGTTGAAGCTTCAAAGgtttctatta ... caccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAG
tgcaaaagggttgttttgttgaatttcctatctgatatcattttccaccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTAGTGCGGATTTATGGTGAAAATTCAGAGCTTTTAC
atctgat putative branch site (score: 181)
tcattttcc CT-rich tract
atatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagttgcagcattatgctgacaattcatcctttaaccagtaattgcaaaagggttgttttgttgaatttcctatctgatatcattttccaccatgcagGATGGTTACCATCTCAAACAAACTGGCCCATACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTAGTGCGGATTTATGGTGAAAATTCAGAGCTTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - gttgcag
- - - - - - - - tgctgac
- - - - - - - - - - - - -ttcatcc
- - - - - - - - - - - - - - - - - - - - - aattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgttg