1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...agttagtggttggtagctaaaggttatagctaactgccattggattttgtttgacttgttaagaggctactgacttcctaattttgaaactttgtttcagGGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACAGATGGCTAGTGCTACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATT
species | Zea mays |
transcript | GRMZM5G825524_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TCACATCTTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAG GGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATDCTGCTCAACAEST: gi|9794638|gb|BE552946.1|BE552946
genomic: TCACATCTTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAGgtaaagatga ... tttgtttcagGGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACA
EST: TTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAG GGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACAEST: gi|60347405|gb|DN214378.1|DN214378
genomic: TTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAGgtaaagatga ... tttgtttcagGGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACA
EST: TCACATCTTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAG GGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACA
genomic: TCACATCTTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAGgtaaagatga ... tttgtttcagGGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACA
tttgtttgacttgttaagaggctactgacttcctaattttgaaactttgtttcagGGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACAGATGGCTAGTGCTACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATT
ctttgtttc CT-rich tract
taattttgaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttagtggttggtagctaaaggttatagctaactgccattggattttgtttgacttgttaagaggctactgacttcctaattttgaaactttgtttcagGGTTCTGCTTTGTTTGAAACGTGCCTTGAGAATCGCAAATGCTGCTCAACAGATGGCTAGTGCTACAAGGGGAAGCAGTGGATCCGTAACTCTATTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA