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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatatcaaagttctttagtctgtaagtttaatttctgaactgcagctttgttctgaatcatcatttactcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT

Basic information

species Zea mays
transcript GRMZM5G809695_T02
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G809695_T03 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os06g10230.1 (Oryza sativa), 3'ss of exon 20
-------gtaagtt--atatcaaagttcttt---agtctgtaagtttaatttctgaactgcagctttgttctgaatcatcatttactcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT
       |||  ||  || |||   ||||||   |  |  ||||    |  |   | ||| ||| |       |    ||  | | |||   ||||| ||  |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
gtaagtagtacctttcatgtcagccttctttttaaacccataag---gacattgaatctgtagcctgagagacatctgtctatcattctc--agAAATCTCAAAAACAACAACATAACTGGGGATGTCTCTTCACTGATGAACTGCTTCAGCCTCAATATCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71769229|gb|DR967166.1|DR967166
EST:     GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCT                         AAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
genomic: GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCTgtaagttata ... actcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
EST: gi|211021287|gb|FL334113.1|FL334113
EST:     GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCT                         AAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
genomic: GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCTgtaagttata ... actcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
EST: gi|211538240|gb|FL353975.1|FL353975
EST:     GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCT                         AAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
genomic: GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCTgtaagttata ... actcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
EST: gi|31405872|gb|CD484604.1|CD484604
EST:     GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCT                         AAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
genomic: GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCTgtaagttata ... actcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
EST: gi|211505743|gb|FL354866.1|FL354866
EST:     GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCT                         AAAACTGGAAAACAACAATATAA
genomic: GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCTgtaagttata ... actcttgtagAAAACTGGAAAACAACAATATAA
EST: gi|32164946|gb|CD670264.1|CD670264
EST:     GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCT                         AAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG
genomic: GGTGGTCTGATTCCTCAAGAACTTGGAATGCTGCAAAACCTGATGTTGCTgtaagttata ... actcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtttaatttctgaactgcagctttgttctgaatcatcatttactcttgtagAAAACTGGAAAACAACAATATAACTGGCGATGTCTCTTCTCTGATGAACTGCTTCAGCCTCAATATCTT
    gtttaat  putative branch site (score: 4)
                                          tttactctt  putative PPT
     tttaatttct  TA-rich tract