Sequence
atgc intronic sequence ATGC exonic sequence...tggttgataggtaggcttctgcaattgaatgcatcttgccctactcagtaacatcttgtatcggacattgtatgttgacaattggtcctttgctgtacagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAAAGTTTCTGATATTGTCTCAATATGGAAAAAGGACCTCCAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G443953_T02 (Zea mays), 3'ss of exon 20
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 3'ss of exon 20
tggttgataggtaggcttctgcaattgaatgcatcttgccctactcagtaacatcttgtatcggacattg--tatgttgacaattggtcctttgctgtacagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAAAGTTTCTGATATTGTCTCAATATGGAAAAAGGACCTCCAAAAG
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-------------gtatttcattactg--ttcacttggccgt--ttggaaaaatcaaatatgtgtcttttgttatctttatgacaagaaattatcttgacagTAACCGGATACCAGAAGCTGCTCTGATGGCACGTTCTTATCTTCCAAGCAAAGTTTCGGAGATAGTAGCTCTATGGAGGGAAGATCTCAGCAAG
upper sequence: GRMZM2G443953_T02 (Zea mays), 3'ss of exon 20
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 20
-tggttgataggtaggcttctgcaattgaatgcatcttgccctactcagtaacatcttgtatcggacattgtatgttgacaattggtcctttgctgtacagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAAAGTTTCTGATATTGTCTCAATATGGAAAAAGGACCTCCAAAAG
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gtaattcattagtagtcacttgagagtttggaaaatcaaatttat------gcacctttggtta---actgtgtgacaatattttttcct--------cagTAACCGGATACCAGAAGCTGCTCTGATGGCACGATCATATCTTCCGAGCAAAGTTTCTGAGATAGTAGCTCTTTGGAGGAAAGATCTCAGCAAG
upper sequence: GRMZM2G443953_T02 (Zea mays), 3'ss of exon 20
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 20
---------------------------------------------------tggttgataggtaggcttctgcaattgaatgcatcttgccctactcagtaacat----cttgtatcggacattgtatgttgacaattggtcctttg------ctgt-acagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAAAGTTTCTGATATTGTCTCAATATGGAAAAAGGACCTCCAAAAG
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gtaatcattttccttaccatataaccatagaaaatcaactgctgatactaatttattacacatttacttatttcatttaacagacaatatggtggtagtttatatgacccaggaagttgagattgagt-ttactgattagactctgatatggtctgttgcagTAATCGGATACCTGAAGCTGCTTTAATGGCACGATCTTACCTTCCAAGCAAGGTTCCAGAGATAATCACGATTTGGAGAAATGACCTCAACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78113978|gb|DV532367.1|DV532367EST: GTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAG TAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAA
genomic: GTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatttgtgt ... tgctgtacagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtaacatcttgtatcggacattgtatgttgacaattggtcctttgctgtacagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAAAGTTTCTGATATTGTCTCAATATGGAAAAAGGACCTCCAAAAG
tcctttgct CT-rich tract
attgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggttgataggtaggcttctgcaattgaatgcatcttgccctactcagtaacatcttgtatcggacattgtatgttgacaattggtcctttgctgtacagTAATCGTATTCCAGAAGCAGCACTGATGGCACGATCTTACCTTCCAAGCAAAGTTTCTGATATTGTCTCAATATGGAAAAAGGACCTCCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - gcttctg
- - - - - - - - - - - - -tgaatgc
- - - - - - - - - - - - - - - - - - tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga