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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatatgtcatggcctgtcgattatgggatgctagagtttcttctaccatctcatcctcatctgctgcagGTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAACAGCAATGGCCGGTCCTATTGGGTTGGTCTATAGTAACTAGTAAGGCAAT

Basic information

species Zea mays
transcript GRMZM2G169927_T02
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169927_T03 (Zea mays), 3'ss of exon 21
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 3'ss of exon 21
-----gtaagcatatgtcatggcctgtcgattatgggatgctagagtttcttctacc----atctcatcctcatc--tgctgcagGTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAACAGCAATGGCCGGTCCTATTGGGTTGGTCTATA-GTAA--CTAGTAAGGCAAT
     ||  |  |||  ||  || | | ||||||| |||| | || |  |   ||||    ||||||||  |  |  |||| ||||||||||||||||||||||||||  ||||  | |  || || ||||| ||||||||||| || || |||||||| || ||||| ||||  | |  ||| |   
gtattgtg-gtttatcgcactgctt-ttgattatgagatgtttgaataccccttacctgaaatctcatctcccgcattgctacagGTGTGGTACGAGTGGGCTGTGACGGCACCTTCTCCATCACCAATCCATAACAGCAATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211483572|gb|FL225317.1|FL225317
EST:     AAGGGTCTCCTATAGAAGTGCACTTCTGGCGGTGCTGTGCCCCCACAAAG                         GTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAAC
genomic: AAGGGTCTCCTATAGAAGTGCACTTCTGGCGGTGCTGTGCCCCCACAAAGgtaagcatat ... tctgctgcagGTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAAC
EST: gi|211483570|gb|FL225315.1|FL225315
EST:     AAGGGTCTCCTATAGAAGTGCACTTCTGGCGGTGCTGTGCCCCCACAAAG                         GTGTGGTACGAGTGGGCTGTGACTACACCGACCCCGTCGCCGATCCACAAC
genomic: AAGGGTCTCCTATAGAAGTGCACTTCTGGCGGTGCTGTGCCCCCACAAAGgtaagcatat ... tctgctgcagGTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAAC
EST: gi|5816272|gb|AI987188.1|AI987188
EST:     AAGGGTCTCCTATAGAAGTGCACTTCTGGCGGTGCTGTGCCCCCACAAAG                         GTGTGGTACGAGTGGGCTGTGACTACACCGACCCCGTCGCCGATCCACAAC
genomic: AAGGGTCTCCTATAGAAGTGCACTTCTGGCGGTGCTGTGCCCCCACAAAGgtaagcatat ... tctgctgcagGTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgattatgggatgctagagtttcttctaccatctcatcctcatctgctgcagGTGTGGTACGAGTGGGCTGTGACTACACCGACCCTGTCGCCGATCCACAACAGCAATGGCCGGTCCTATTGGGTTGGTCTATAGTAACTAGTAAGGCAAT
                                  tctcatcctcatct  CT-rich tract
     attat  TA-rich tract