Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatttatatgacaatatagttttacagaaacagttttactatctatttcagacatgatctggtactttctgaagcttttttgtttgtttgcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG

Basic information

species Zea mays
transcript GRMZM2G158043_T03
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T03 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 3'ss of exon 11
-gtatttatatgacaatatagttttacagaaacagttt-tactatctatttcagac--atgatctggtactttctgaagcttttttgtttgtttgcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG
 |||| | ||| || |   | |  |    ||| |  |  || | | ||     ||   |  |||| ||  | |||     | |||| |||| ||| | |||||||| || || | ||| || ||||| |||  ||||||||||||||||||| |  | |||||||| ||||||||||||
agtatatttatcactacccactccttggaaaataactaataatctttagaaaggattaacaatcttgttttctcta----tgttttctttgattgttggtgcagACCCCAATTGGCCTATCGATTGATGAGAAATGCAGGATAAATCATTTGGCTTCTAGCATGATCGCATTATCCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18648749|gb|BM497568.1|BM497568
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|18450794|gb|BM429072.1|BM429072
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|87152540|gb|DY397329.1|DY397329
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|18648748|gb|BM497567.1|BM497567
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|60396203|gb|DN229072.1|DN229072
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|31360398|gb|CD444755.1|CD444755
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcagacatgatctggtactttctgaagcttttttgtttgtttgcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG
                                          tttgctt  CT-rich tract
                               ttttttgtttgttt  TA-rich tract