Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtttcttgggcatttaactgaaactgaaagtttgccttgttggtggttgggttacgtaccgatgagttatatgatttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151905_T05 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 3'ss of exon 20
gtaagatg-tttcttgggcat-ttaactgaaactgaaagtttgccttgttggtggttgggttacgtaccgatgagttatatgattta-atgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG
|||| |   |||||| ||  | | || ||||||  |  || |   |||||||| |||      |  |   || |  | |||| |||  ||||||||||||||||||||| || || ||  |||||||||| |||||||| || ||||||||
gtaacacaatttcttaggagtataaagtgaaacgtacggtctattttgttggtagttt-----cacagttatcaactttatgttttttatgcagTGTCTGCACTACTGTTATCATGGGGGGCCGTGAAGTGAAGACTGAGGATGATACTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015952|gb|DT943122.1|DT943122
EST:     ATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|37361410|gb|CF602699.1|CF602699
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|6020477|gb|AW065405.1|AW065405
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|211283755|gb|FL354685.1|FL354685
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|32837283|gb|CD976961.1|CD976961
EST:     ACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|32839265|gb|CD978946.1|CD978946
EST:     ACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|60342170|gb|DN209143.1|DN209143
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|32837702|gb|CD977380.1|CD977380
EST:     ACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgccttgttggtggttgggttacgtaccgatgagttatatgatttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG
                                            atttaat  putative branch site (score: 4)
                                   agttatatgatttaat  TA-rich tract