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gtttgctgatacttccttgcttactatctgtttgtccatttgtcgtaattattgctctctgcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGGAGACCCTTGTTTCTGTTGGTATGACCCTGGGCATCTCGACAAGGAACA
species | Zea mays |
transcript | GRMZM2G133885_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TTGGGTATTTCTCCTTTGGAGGGAGCCCAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTEST: gi|6194556|gb|AW146660.1|AW146660
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCT
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTTGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|6021540|gb|AW066468.1|AW066468
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGCACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|37361294|gb|CF602583.1|CF602583
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|32912653|gb|CF017465.1|CF017465
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|33770671|gb|CF272965.1|CF272965
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|32913231|gb|CF018043.1|CF018043
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|211196234|gb|FL472452.1|FL472452
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|32849096|gb|CD988777.1|CD988777
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: ACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|60396723|gb|DN229588.1|DN229588
genomic: ACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|78103985|gb|DV522403.1|DV522403
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTTTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGEST: gi|40302877|gb|CK347264.1|CK347264
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
EST: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG GACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
genomic: TTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGgtttgctgat ... gcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTG
cttgcttactatctgtttgtccatttgtcgtaattattgctctctgcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGGAGACCCTTGTTTCTGTTGGTATGACCCTGGGCATCTCGACAAGGAACA
tgcttac putative branch site (score: 80)
ctctctgc putative PPT
taattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctgatacttccttgcttactatctgtttgtccatttgtcgtaattattgctctctgcgtgggcagGACGCCATCCAATTTGACGCTGATCTCGTGGCAAACAGCGAAAGGTCACTGGAGACCCTTGTTTCTGTTGGTATGACCCTGGGCATCTCGACAAGGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA