1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
...gtccactgacttccttatcctgatgaaactatctatgccatattctttcttatcctgatatggctagtgttatcttggtgtctgattcctggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTATCATCTTGCAAAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGA
species | Zea mays |
transcript | GRMZM2G132712_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422266|gb|FK992807.1|FK992807
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422265|gb|FK992806.1|FK992806
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422271|gb|FK992812.1|FK992812
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422274|gb|FK992815.1|FK992815
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422270|gb|FK992811.1|FK992811
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAANAAACGTGGCGCTGTTGCAGTACAG TTANATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422268|gb|FK992809.1|FK992809
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422273|gb|FK992814.1|FK992814
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|71443249|gb|DR824299.1|DR824299
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|211422275|gb|FK992816.1|FK992816
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTAEST: gi|31350151|gb|CD434508.1|CD434508
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
EST: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAG TTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
genomic: ATGTTTTTCCATTTAACTCGGAGAAGAAACGTGGCGCTGTTGCAGTACAGgtactacata ... ggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTA
tttcttatcctgatatggctagtgttatcttggtgtctgattcctggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTATCATCTTGCAAAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGA
aatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccactgacttccttatcctgatgaaactatctatgccatattctttcttatcctgatatggctagtgttatcttggtgtctgattcctggaattttagTTAGATGATGGTGTTCACATCCACTGGAAAGGTGCAGCTGAAATAGTGTTATCATCTTGCAAAAGCTGGCTTTCCGTCGATGGCTCTGTTCAGTCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG