1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtacgtttgctcttacgcgtgccattgatagaaaaaccctctgcatggttttcaccggcttcgttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG
species | Zea mays |
transcript | GRMZM2G126453_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGEST: gi|32921157|gb|CF025969.1|CF025969
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAG
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGEST: gi|32920203|gb|CF025015.1|CF025015
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGEST: gi|211048841|gb|FL187601.1|FL187601
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGEST: gi|211048838|gb|FL187598.1|FL187598
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAEST: gi|32921345|gb|CF026157.1|CF026157
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAA-TCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAA
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGEST: gi|211048837|gb|FL187597.1|FL187597
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGEST: gi|32920665|gb|CF025477.1|CF025477
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
EST: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAG AATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
genomic: TGGACTCGCTTGCCAATATGACTGATGGTTATTCAGGAAGCGACCTGAAGgtacgtttgc ... ttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAG
gtgccattgatagaaaaaccctctgcatggttttcaccggcttcgttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG
cattgat putative branch site (score: 4)
ttgctctc putative PPT
atagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttgctcttacgcgtgccattgatagaaaaaccctctgcatggttttcaccggcttcgttgctctcagAATCTGTGTGTGACCGCGGCGCATTACCCCATCCGAGAAATTCTGGAGAAGGAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG