1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ataatgaaatttatttccaaaatgtactttaatcagcccatatcgggatacaaatatgttgcgatggatgctgatgggttctctcttttttccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT
species | Zea mays |
transcript | GRMZM2G073054_T02 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|60338294|gb|DN205267.1|DN205267
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|149040592|gb|EE046833.2|EE046833
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|78024920|gb|DV493307.1|DV493307
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATTGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|60394366|gb|DN227236.1|DN227236
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATTGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|4966932|gb|AI691970.1|AI691970
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATTGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|113702675|gb|EE680179.1|EE680179
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|91878000|gb|EB407957.1|EB407957
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|60345781|gb|DN212754.1|DN212754
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATTGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATEST: gi|211026372|gb|FL004586.1|FL004586
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGEST: gi|166506299|gb|EG293636.1|EG293636
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGG
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGEST: gi|101386687|gb|EB815360.1|EB815360
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGG
EST: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAG ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
genomic: ATAGCTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGgtatgcagct ... tccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGAT
ggatacaaatatgttgcgatggatgctgatgggttctctcttttttccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT
tgctgat putative branch site (score: 3)
ttctctcttttttcct putative PPT
aaatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgaaatttatttccaaaatgtactttaatcagcccatatcgggatacaaatatgttgcgatggatgctgatgggttctctcttttttccttgccagATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA