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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT

Basic information

species Zea mays
transcript GRMZM2G063851_T01
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 3'ss of exon 19
-------------------------------------------gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
                                            ||||| || |    |    ||     | | |||  | |||||     | |||| | |   ||||| | ||  ||||||||| ||||||||||| ||||||||||| || || || ||||||||||| ||||||||||||||||||||| ||||||||||    |||||||||||||
gtatctctcactttccactttctacctcatttctttggatcttctctgcattttgtactacaatgcagaggatccttcttcattctatcaaccaattctttcacattatctgtgtcgcagCTCATTTGGGACCGTGCTCTTGGCCTGCCGCTCGAAAGACCGAAGAGTGTCACCATGGAGTGGCTGGAGAACCACTGCAAGAAGGTTGCTGCTTGAAGCT

upper sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 3'ss of exon 19
gtctgccttctaccttc---tcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatg-----cagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
|| |   |  | |||||   | |  |  |  ||  | ||   || |     | |||| ||  |  | ||  || |||     |||||||| ||||||||||| ||||| ||||| || || || ||||||||||| ||||||||||||||||| ||| ||||||||||    |||||||||||||
gtatatttcttcccttcaactgtctacctctttcttcagatcttgtatcaaccaattctgacttgtgatacattatgtatgacagCTCATTTGGGACCGTGCTCTTGGTCTGCCGCTCGAAAGACCGAAGAGTGTCACCATGGAGTGGCTGGAAAACCACTGCAAGAAGGCTGCTGCTTGAAGCT

upper sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 20
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 3'ss of exon 19
-------------gtctgccttctac-cttctcttg--atatagtttcttagt---aattc---tgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAA---GGCTGCTTGAAGCT
              | | |    ||| | | | ||   | |||   | | |     || ||   ||||  | | | |  ||||  | ||||     ||||| || |||||||| || ||||| ||  ||||||||||||| ||||||||||||||||| ||||| ||   | | || |||||        |||||| |    
gtaacatatatatatttacacattacgcctttgttactacataacatttaaaacagaactcatatgctctccattctcatttg--tgtttaattcacagCTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACCATGGACTGGCTTGAAGCCCATTGTAAGAAAGCTTCATCTGCTTAAG---

upper sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 20
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 19
--------------------------------------------------gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
                                                  || ||  ||||    |||||    ||  || ||| |   | |  |||  | ||| |  ||  |  ||  |    ||| | || ||||||||||| |||||  |||| ||||||||||| || |||||||| ||||| ||||| || ||| ||||||||||    || || | |  ||
gttctcactatgtccctcaccttcttttctcttctccctttccgtattttgtttgttttcttaaatctctc---attcttccttcg-ggtgcatctgaatcattattattattatttcttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTACAATGGAATGGCTTGAAAACCACTGCAAGAAAGCAGCCGCCTAATTCT

upper sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 20
lower sequence: EFJ25084 (Selaginella moellendorffii), 3'ss of exon 18
gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
                         || |  | | ||  |||      ||    |||  || || |  ||  | |||||  | ||||| || || ||||| || ||| |||| ||||| |||||  | ||||||||||||||||||||||| ||||||||  |  | |    |   |
------------------------gtactagcattgtgcttccaagctctccaattgactgcttgt--atccttcagCTGGTGTGGGATCGCGCACTTGGTCTTCCAATTGAAAGGCCAAAGAGCATGACCATGGAGTGGCTGGAGAACTATTGCAAGAAGCAAACCGTGACAGCGT

upper sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 20
lower sequence: EFJ29959 (Selaginella moellendorffii), 3'ss of exon 18
gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
              | ||     | | | |||  ||   | |   || ||  || | |   |   |        |||||  | ||||| || || ||||| || ||| |||| ||||| |||||  | ||||||| ||||||||||||||| ||||||||  |  | |    |   |
-------------gtactaccattgt-gcttccaagctctccaattgactgcttgtatcgtacctt--------cagCTGGTGTGGGATCGCGCACTTGGTCTTCCAATTGAAAGGCCAAAGAGCATGACCATGGGGTGGCTGGAGAACTATTGCAAGAAGCAAACCGTGACAGCGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33100125|gb|CF060085.1|CF060085
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|40335071|gb|CK369141.1|CK369141
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|84908305|gb|DW404183.1|DW404183
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|5922342|gb|AW055631.1|AW055631
EST:     ATTACACTGTCTTGTTCGGTGTTTCAANAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|111433800|gb|EE298053.1|EE298053
EST:     ATTACACTGTCTTGTTCGGGGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|89248619|gb|DY620405.1|DY620405
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|5901109|gb|AW042209.1|AW042209
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|116813560|gb|EC856011.1|EC856011
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|31364242|gb|CD448597.1|CD448597
EST:     ATTACACTGTCTTGTTCGGGGGTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|148929642|gb|EC876096.2|EC876096
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         TTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|76010584|gb|DT937754.1|DT937754
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|31363851|gb|CD448206.1|CD448206
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|7227830|gb|AW566471.1|AW566471
EST:     TCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCCCTTGAAAGGCCGAAGAGTGTT
genomic: TCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|149100798|gb|EE186892.2|EE186892
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|6973552|gb|AW438288.1|AW438288
EST:     TTACACTGTCTTGTTCGGTGTTTCAAGAAGCTATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: TTACACTGTCTTGTTCGGTGTTTCAAGAAGC-ATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|110202089|gb|EC883986.1|EC883986
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|71771088|gb|DR969025.1|DR969025
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|78021514|gb|DV489901.1|DV489901
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|37380261|gb|CF626924.1|CF626924
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|241994796|gb|GR421149.1|GR421149
EST:     ATTACACTGTCTTGTTCGGCGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|110954440|gb|EE174492.1|EE174492
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|76010585|gb|DT937755.1|DT937755
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|18162925|gb|BM332764.1|BM332764
EST:     GCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: GCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|148991805|gb|EE033386.2|EE033386
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|93284645|gb|EB676909.1|EB676909
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|37376636|gb|CF624868.1|CF624868
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCTTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|60359668|gb|DN226641.1|DN226641
EST:     GTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: GTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|149082973|gb|EE172210.2|EE172210
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|60395299|gb|DN228168.1|DN228168
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: gi|37399560|gb|CF637110.1|CF637110
EST:     ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG                         CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
                           taattttgtttgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC